RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 PYGO1Q9Y3Y4 419 aa11.98□□□□□ -0.49
SDC4-201ENST00000372733 TRBV30A0A0K0K1B3 111 aa11.98□□□□□ -0.49
SDC4-201ENST00000372733 IGHV1-58A0A0C4DH39 117 aa11.97□□□□□ -0.49
SDC4-201ENST00000372733 CRLF1O75462 422 aa11.97□□□□□ -0.49
SDC4-201ENST00000372733 DEFB112Q30KQ8 113 aa11.97□□□□□ -0.49
SDC4-201ENST00000372733 ICOSQ9Y6W8 199 aa11.97□□□□□ -0.49
SDC4-201ENST00000372733 IGKV2D-29A0A075B6S2 120 aaPredicted RBP11.96□□□□□ -0.49
SDC4-201ENST00000372733 TRBV10-2A0A0K0K1G8 114 aa11.96□□□□□ -0.49
SDC4-201ENST00000372733 IGKV2-29A2NJV5 120 aaPredicted RBP11.96□□□□□ -0.49
SDC4-201ENST00000372733 Q6ZSN1 163 aa11.96□□□□□ -0.49
SDC4-201ENST00000372733 TNFRSF18Q9Y5U5 241 aa11.96□□□□□ -0.49
SDC4-201ENST00000372733 PKD1L2Q7Z442 2459 aa11.96□□□□□ -0.49
SDC4-201ENST00000372733 TRAV4A0A0B4J268 109 aa11.96□□□□□ -0.5
SDC4-201ENST00000372733 VSIG2Q96IQ7 327 aa11.95□□□□□ -0.5
SDC4-201ENST00000372733 HOXD3P31249 432 aaPredicted RBP11.95□□□□□ -0.5
SDC4-201ENST00000372733 MIAQ16674 131 aa11.95□□□□□ -0.5
SDC4-201ENST00000372733 SPANXDQ9BXN6 97 aa11.95□□□□□ -0.5
SDC4-201ENST00000372733 SPANXCQ9NY87 97 aa11.95□□□□□ -0.5
SDC4-201ENST00000372733 H3BMM0 161 aa11.94□□□□□ -0.5
SDC4-201ENST00000372733 SNCGO76070 127 aa11.94□□□□□ -0.5
SDC4-201ENST00000372733 CLEC2BQ92478 149 aa11.94□□□□□ -0.5
SDC4-201ENST00000372733 UBE2WQ96B02 151 aa11.94□□□□□ -0.5
SDC4-201ENST00000372733 CHCHD7Q9BUK0 85 aa11.94□□□□□ -0.5
SDC4-201ENST00000372733 EDA2RQ9HAV5 297 aa11.94□□□□□ -0.5
SDC4-201ENST00000372733 NACAE9PAV3 2078 aa11.94□□□□□ -0.5
SDC4-201ENST00000372733 IGHV3-38A0A0C4DH36 116 aa11.93□□□□□ -0.5
SDC4-201ENST00000372733 RPL13AP40429 203 aaKnown RBP11.93□□□□□ -0.5
SDC4-201ENST00000372733 C2orf82Q6UX34 121 aa11.93□□□□□ -0.5
SDC4-201ENST00000372733 DAND5Q8N907 189 aa11.93□□□□□ -0.5
SDC4-201ENST00000372733 UBE2D4Q9Y2X8 147 aa11.93□□□□□ -0.5
SDC4-201ENST00000372733 TRAV8-4A0A0B4J246 113 aa11.93□□□□□ -0.5
SDC4-201ENST00000372733 RBMY1BA6NDE4 496 aaKnown RBP11.93□□□□□ -0.5
SDC4-201ENST00000372733 RBMY1EA6NEQ0 496 aaKnown RBP11.93□□□□□ -0.5
SDC4-201ENST00000372733 RBMY1DP0C7P1 496 aaKnown RBP11.93□□□□□ -0.5
SDC4-201ENST00000372733 DEFB131AP59861 70 aa11.93□□□□□ -0.5
SDC4-201ENST00000372733 DUX3Q96PT4 197 aa11.93□□□□□ -0.5
SDC4-201ENST00000372733 LINC00467Q9BRT7 94 aa11.93□□□□□ -0.5
SDC4-201ENST00000372733 TINCRA0A1B0GVN0 87 aa11.92□□□□□ -0.5
SDC4-201ENST00000372733 B4DSR2 109 aa11.92□□□□□ -0.5
SDC4-201ENST00000372733 GAGE2BQ13066 116 aa11.92□□□□□ -0.5
SDC4-201ENST00000372733 GAGE2EQ4V326 116 aa11.92□□□□□ -0.5
SDC4-201ENST00000372733 GAGE2DQ9UEU5 116 aa11.92□□□□□ -0.5
SDC4-201ENST00000372733 H7C423 109 aa11.92□□□□□ -0.5
SDC4-201ENST00000372733 NHLRC4P0CG21 123 aaPredicted RBP11.92□□□□□ -0.5
SDC4-201ENST00000372733 RNF152Q8N8N0 203 aa11.92□□□□□ -0.5
SDC4-201ENST00000372733 LINC01600Q96MT4 127 aa11.91□□□□□ -0.5
SDC4-201ENST00000372733 TMEM61Q8N0U2 210 aa11.91□□□□□ -0.5
SDC4-201ENST00000372733 SPANXA1Q9NS26 97 aa11.91□□□□□ -0.5
SDC4-201ENST00000372733 CFAP46Q8IYW2 2715 aa11.91□□□□□ -0.5
SDC4-201ENST00000372733 DEFB136Q30KP8 78 aa11.9□□□□□ -0.5
SDC4-201ENST00000372733 NRGNQ92686 78 aa11.9□□□□□ -0.5
SDC4-201ENST00000372733 ZFYVE26Q68DK2 2539 aa11.9□□□□□ -0.5
SDC4-201ENST00000372733 CSMD2Q7Z408 3487 aa11.9□□□□□ -0.5
SDC4-201ENST00000372733 TMEM89A2RUT3 159 aa11.9□□□□□ -0.51
SDC4-201ENST00000372733 UTP20O75691 2785 aaKnown RBP11.89□□□□□ -0.51
SDC4-201ENST00000372733 C18orf65Q6ZTR6 163 aa11.89□□□□□ -0.51
SDC4-201ENST00000372733 C15orf53Q8NAA6 179 aa11.89□□□□□ -0.51
SDC4-201ENST00000372733 CDKN2A-AS1Q9UH64 79 aa11.89□□□□□ -0.51
SDC4-201ENST00000372733 ACACBO00763 2458 aa11.89□□□□□ -0.51
SDC4-201ENST00000372733 SLURP1P55000 103 aa11.89□□□□□ -0.51
SDC4-201ENST00000372733 NDUFV3P56181 108 aaKnown RBP11.89□□□□□ -0.51
SDC4-201ENST00000372733 ZANQ9Y493 2812 aa11.88□□□□□ -0.51
SDC4-201ENST00000372733 COX6CP09669 75 aa11.88□□□□□ -0.51
SDC4-201ENST00000372733 ZNF415Q09FC8 603 aa11.88□□□□□ -0.51
SDC4-201ENST00000372733 SS18L2Q9UHA2 77 aa11.88□□□□□ -0.51
SDC4-201ENST00000372733 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP11.88□□□□□ -0.51
SDC4-201ENST00000372733 LST1O00453 97 aa11.87□□□□□ -0.51
SDC4-201ENST00000372733 MAPK1IP1LQ8NDC0 245 aa11.87□□□□□ -0.51
SDC4-201ENST00000372733 H3BT86 120 aa11.87□□□□□ -0.51
SDC4-201ENST00000372733 TTC32Q5I0X7 151 aa11.87□□□□□ -0.51
SDC4-201ENST00000372733 FLNCQ14315 2725 aa11.87□□□□□ -0.51
SDC4-201ENST00000372733 B5MCH6 92 aa11.86□□□□□ -0.51
SDC4-201ENST00000372733 GAGE5Q13069 117 aa11.86□□□□□ -0.51
SDC4-201ENST00000372733 GAGE6Q13070 117 aa11.86□□□□□ -0.51
SDC4-201ENST00000372733 YAE1D1Q9NRH1 226 aa11.86□□□□□ -0.51
SDC4-201ENST00000372733 USP9YO00507 2555 aaPredicted RBP11.85□□□□□ -0.51
SDC4-201ENST00000372733 TMEM101Q96IK0 257 aa11.85□□□□□ -0.51
SDC4-201ENST00000372733 UBE2E2Q96LR5 201 aa11.85□□□□□ -0.51
SDC4-201ENST00000372733 ZNF702PQ9H963 129 aa11.85□□□□□ -0.51
SDC4-201ENST00000372733 A0A0U1RRA0 63 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 A8MTW9 85 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 NDUFA1O15239 70 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 TIMM17BO60830 172 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 IGHV3-53P01767 116 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 IFITM1P13164 125 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 COX6A2Q02221 97 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 C11orf72Q8NBR9 251 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 ZNF625Q96I27 306 aaPredicted RBP11.84□□□□□ -0.51
SDC4-201ENST00000372733 LINC01587Q99440 93 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 VPREB3Q9UKI3 123 aa11.84□□□□□ -0.51
SDC4-201ENST00000372733 PRORYQ9H606 182 aa11.83□□□□□ -0.52
SDC4-201ENST00000372733 CCDC179H3BU77 68 aa11.83□□□□□ -0.52
SDC4-201ENST00000372733 CITED2Q99967 270 aaPredicted RBP11.83□□□□□ -0.52
SDC4-201ENST00000372733 IGSF10Q6WRI0 2623 aa11.82□□□□□ -0.52
SDC4-201ENST00000372733 CACNA1AO00555 2505 aa11.82□□□□□ -0.52
SDC4-201ENST00000372733 DGAT2L7PQ6IED9 249 aa11.82□□□□□ -0.52
SDC4-201ENST00000372733 Q6Q795 121 aa11.82□□□□□ -0.52
SDC4-201ENST00000372733 Q9H8V8 135 aa11.82□□□□□ -0.52
SDC4-201ENST00000372733 USP9XQ93008 2570 aaPredicted RBP11.82□□□□□ -0.52
SDC4-201ENST00000372733 IGHV3OR16-12A0A075B7B8 117 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms