RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 IGKV2-29A2NJV5 120 aaPredicted RBP8.94□□□□□ -0.98
CLIP3-201ENST00000360535 RHODO00212 210 aa8.94□□□□□ -0.98
CLIP3-201ENST00000360535 CFHR3Q02985 330 aa8.94□□□□□ -0.98
CLIP3-201ENST00000360535 C11orf44Q8N8P7 122 aa8.94□□□□□ -0.98
CLIP3-201ENST00000360535 SPATA25Q9BR10 227 aa8.94□□□□□ -0.98
CLIP3-201ENST00000360535 FHL3Q13643 280 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 LYRM7Q5U5X0 104 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 ANKRD29Q8N6D5 301 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 POM121L12Q8N7R1 296 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 CARD19Q96LW7 228 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 ERG28Q9UKR5 140 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 TMEM223A0PJW6 202 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 UBE2D3P61077 147 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 UBE2D2P62837 147 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 Q6ZSV7 163 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 AMELXQ99217 191 aa8.93□□□□□ -0.98
CLIP3-201ENST00000360535 GATA3P23771 443 aa8.92□□□□□ -0.98
CLIP3-201ENST00000360535 DAND5Q8N907 189 aa8.92□□□□□ -0.98
CLIP3-201ENST00000360535 LEPROTO15243 131 aa8.92□□□□□ -0.98
CLIP3-201ENST00000360535 TIMM21Q9BVV7 248 aa8.92□□□□□ -0.98
CLIP3-201ENST00000360535 TRBV6-5A0A0K0K1A5 114 aa8.92□□□□□ -0.98
CLIP3-201ENST00000360535 ELANEP08246 267 aa8.92□□□□□ -0.98
CLIP3-201ENST00000360535 EIF4EBP3O60516 100 aaPredicted RBP8.91□□□□□ -0.98
CLIP3-201ENST00000360535 IGHV3-30-3P0DP02 117 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 SLC25A20O43772 301 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 XGP55808 180 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 RPL32P62910 135 aaKnown RBP8.91□□□□□ -0.98
CLIP3-201ENST00000360535 RHOHQ15669 191 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 Q6ZSN1 163 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 TEN1Q86WV5 123 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 PPDPFLQ8WWR9 84 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 RNF183Q96D59 192 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 ZNF625Q96I27 306 aaPredicted RBP8.91□□□□□ -0.98
CLIP3-201ENST00000360535 LINC01587Q99440 93 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 CDIP1Q9H305 208 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 PRORYQ9H606 182 aa8.91□□□□□ -0.98
CLIP3-201ENST00000360535 NSUN5P1Q3KNT7 163 aa8.9□□□□□ -0.98
CLIP3-201ENST00000360535 ANAPC13Q9BS18 74 aa8.9□□□□□ -0.98
CLIP3-201ENST00000360535 TRGV11A0A075B6L2 103 aa8.9□□□□□ -0.98
CLIP3-201ENST00000360535 CFAP161Q6P656 301 aa8.9□□□□□ -0.98
CLIP3-201ENST00000360535 A0A0J9YXY3 114 aa8.9□□□□□ -0.99
CLIP3-201ENST00000360535 MTORP42345 2549 aa8.89□□□□□ -0.99
CLIP3-201ENST00000360535 IGHV3-33P01772 117 aa8.89□□□□□ -0.99
CLIP3-201ENST00000360535 NIPBLQ6KC79 2804 aaeCLIP8.89□□□□□ -0.99
CLIP3-201ENST00000360535 FN1P02751 2386 aaKnown RBP8.89□□□□□ -0.99
CLIP3-201ENST00000360535 TRBV20-1A0A075B6N2 111 aa8.89□□□□□ -0.99
CLIP3-201ENST00000360535 UBE2E2Q96LR5 201 aa8.89□□□□□ -0.99
CLIP3-201ENST00000360535 ACANP16112 2415 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 BRI3O95415 125 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 DGAT2L7PQ6IED9 249 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 LINC01356Q8N9X3 169 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 NTN5Q8WTR8 489 aaPredicted RBP8.88□□□□□ -0.99
CLIP3-201ENST00000360535 XCL2Q9UBD3 114 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 NDUFA12Q9UI09 145 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 IGHV3-53P01767 116 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 PRB1P04280 392 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 ADAMTSL4-AS1Q5T5F5 129 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 Q6ZUT4 128 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 TMEM61Q8N0U2 210 aa8.88□□□□□ -0.99
CLIP3-201ENST00000360535 TMEM263Q8WUH6 116 aaKnown RBP8.88□□□□□ -0.99
CLIP3-201ENST00000360535 A0A1W2PRX2 142 aa8.87□□□□□ -0.99
CLIP3-201ENST00000360535 DYNLRB2Q8TF09 96 aa8.87□□□□□ -0.99
CLIP3-201ENST00000360535 USP24Q9UPU5 2620 aa8.87□□□□□ -0.99
CLIP3-201ENST00000360535 B5MCH6 92 aa8.87□□□□□ -0.99
CLIP3-201ENST00000360535 RBMY1BA6NDE4 496 aaKnown RBP8.87□□□□□ -0.99
CLIP3-201ENST00000360535 RBMY1EA6NEQ0 496 aaKnown RBP8.87□□□□□ -0.99
CLIP3-201ENST00000360535 RBMY1DP0C7P1 496 aaKnown RBP8.87□□□□□ -0.99
CLIP3-201ENST00000360535 LINC00467Q9BRT7 94 aa8.86□□□□□ -0.99
CLIP3-201ENST00000360535 VPREB3Q9UKI3 123 aa8.86□□□□□ -0.99
CLIP3-201ENST00000360535 ATP6V0E2Q8NHE4 81 aa8.86□□□□□ -0.99
CLIP3-201ENST00000360535 TEX49A0A1B0GTD5 131 aa8.85□□□□□ -0.99
CLIP3-201ENST00000360535 TRIAP1O43715 76 aa8.85□□□□□ -0.99
CLIP3-201ENST00000360535 CLEC2BQ92478 149 aa8.85□□□□□ -0.99
CLIP3-201ENST00000360535 ODF3Q96PU9 254 aa8.85□□□□□ -0.99
CLIP3-201ENST00000360535 H3BMM0 161 aa8.85□□□□□ -0.99
CLIP3-201ENST00000360535 NDUFA7O95182 113 aa8.84□□□□□ -0.99
CLIP3-201ENST00000360535 ZNF702PQ9H963 129 aa8.84□□□□□ -0.99
CLIP3-201ENST00000360535 M0R2P5 195 aa8.84□□□□□ -0.99
CLIP3-201ENST00000360535 CDKN2A-AS1Q9UH64 79 aa8.84□□□□□ -0.99
CLIP3-201ENST00000360535 TRAV16A0A0A6YYK6 109 aaPredicted RBP8.83□□□□□ -1
CLIP3-201ENST00000360535 TEX29Q8N6K0 151 aa8.83□□□□□ -1
CLIP3-201ENST00000360535 TRAV13-1A0A0B4J241 112 aa8.83□□□□□ -1
CLIP3-201ENST00000360535 ZNF415Q09FC8 603 aa8.83□□□□□ -1
CLIP3-201ENST00000360535 ATXN8Q156A1 80 aa8.83□□□□□ -1
CLIP3-201ENST00000360535 LINC01620Q4KN68 170 aa8.83□□□□□ -1
CLIP3-201ENST00000360535 FAM104AQ969W3 186 aa8.83□□□□□ -1
CLIP3-201ENST00000360535 IGHV1-58A0A0C4DH39 117 aa8.82□□□□□ -1
CLIP3-201ENST00000360535 TRGV1A0A0A0MS02 117 aa8.82□□□□□ -1
CLIP3-201ENST00000360535 IGKV3OR2-268A0A0C4DH90 116 aa8.82□□□□□ -1
CLIP3-201ENST00000360535 ZFAND6Q6FIF0 208 aa8.82□□□□□ -1
CLIP3-201ENST00000360535 CHCHD7Q9BUK0 85 aa8.82□□□□□ -1
CLIP3-201ENST00000360535 A0A0B4J2C4 111 aa8.81□□□□□ -1
CLIP3-201ENST00000360535 MRPS36P82909 103 aaKnown RBP8.81□□□□□ -1
CLIP3-201ENST00000360535 C2orf82Q6UX34 121 aa8.81□□□□□ -1
CLIP3-201ENST00000360535 KRTAP10-9P60411 292 aa8.81□□□□□ -1
CLIP3-201ENST00000360535 UBE2D4Q9Y2X8 147 aa8.81□□□□□ -1
CLIP3-201ENST00000360535 VSIG2Q96IQ7 327 aa8.81□□□□□ -1
CLIP3-201ENST00000360535 MAP6D1Q9H9H5 199 aa8.81□□□□□ -1
CLIP3-201ENST00000360535 NOTCH2Q04721 2471 aa8.8□□□□□ -1
CLIP3-201ENST00000360535 ICOSQ9Y6W8 199 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms