RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 SRSF9Q13242 221 aaKnown RBP eCLIP15.1■□□□□ 0.01
CCDC88B-203ENST00000359902 ZNF479Q96JC4 524 aa15.1■□□□□ 0.01
CCDC88B-203ENST00000359902 YAE1D1Q9NRH1 226 aa15.1■□□□□ 0.01
CCDC88B-203ENST00000359902 AZU1P20160 251 aa15.1■□□□□ 0.01
CCDC88B-203ENST00000359902 STHQ8IWL8 128 aa15.1■□□□□ 0.01
CCDC88B-203ENST00000359902 AMELXQ99217 191 aa15.1■□□□□ 0.01
CCDC88B-203ENST00000359902 TMEM223A0PJW6 202 aa15.09■□□□□ 0.01
CCDC88B-203ENST00000359902 J3QQQ9 107 aa15.09■□□□□ 0.01
CCDC88B-203ENST00000359902 LINC01006Q8NI28 216 aa15.09■□□□□ 0.01
CCDC88B-203ENST00000359902 CUBNO60494 3623 aa15.09■□□□□ 0.01
CCDC88B-203ENST00000359902 A0A0J9YXV3 536 aa15.09■□□□□ 0.01
CCDC88B-203ENST00000359902 RHODO00212 210 aa15.09■□□□□ 0.01
CCDC88B-203ENST00000359902 IGHV3-53P01767 116 aa15.09■□□□□ 0.01
CCDC88B-203ENST00000359902 WNK1Q9H4A3 2382 aa15.08■□□□□ 0
CCDC88B-203ENST00000359902 RRN3P1Q2M238 152 aa15.08■□□□□ 0
CCDC88B-203ENST00000359902 C1orf158Q8N1D5 194 aa15.08■□□□□ 0
CCDC88B-203ENST00000359902 TSSC4Q9Y5U2 329 aaPredicted RBP15.08■□□□□ 0
CCDC88B-203ENST00000359902 RS1O15537 224 aa15.08■□□□□ 0
CCDC88B-203ENST00000359902 ZNF22P17026 224 aaPredicted RBP15.08■□□□□ 0
CCDC88B-203ENST00000359902 C16orf95Q9H693 158 aa15.07■□□□□ 0
CCDC88B-203ENST00000359902 RNASE1P07998 156 aaKnown RBP15.06■□□□□ 0
CCDC88B-203ENST00000359902 CEMP1Q6PRD7 247 aaPredicted RBP15.06■□□□□ 0
CCDC88B-203ENST00000359902 CHCHD7Q9BUK0 85 aa15.06■□□□□ 0
CCDC88B-203ENST00000359902 LEPROTO15243 131 aa15.06■□□□□ 0
CCDC88B-203ENST00000359902 LGALS3P17931 250 aaKnown RBP15.06■□□□□ 0
CCDC88B-203ENST00000359902 SLC25A29Q8N8R3 303 aa15.06■□□□□ 0
CCDC88B-203ENST00000359902 TMEM238LA0A1B0GVL6 79 aa15.05■□□□□ 0
CCDC88B-203ENST00000359902 A6NJY4 79 aa15.05■□□□□ 0
CCDC88B-203ENST00000359902 DNAJC30Q96LL9 226 aa15.05■□□□□ 0
CCDC88B-203ENST00000359902 SPANXB1Q9NS25 103 aaPredicted RBP15.05■□□□□ 0
CCDC88B-203ENST00000359902 IGHV3OR16-12A0A075B7B8 117 aa15.05■□□□□ -0
CCDC88B-203ENST00000359902 UBE2D1P51668 147 aa15.05■□□□□ -0
CCDC88B-203ENST00000359902 PLA2G2AP14555 144 aa15.04■□□□□ -0
CCDC88B-203ENST00000359902 CRYBA4P53673 196 aa15.04■□□□□ -0
CCDC88B-203ENST00000359902 ACANP16112 2415 aa15.03■□□□□ -0
CCDC88B-203ENST00000359902 IL17DQ8TAD2 202 aa15.03■□□□□ -0
CCDC88B-203ENST00000359902 IGHV3-30P01768 117 aa15.02■□□□□ -0
CCDC88B-203ENST00000359902 IGHV3-30-5P0DP03 117 aa15.02■□□□□ -0
CCDC88B-203ENST00000359902 MRPS36P82909 103 aaKnown RBP15.02■□□□□ -0
CCDC88B-203ENST00000359902 UBE2D4Q9Y2X8 147 aa15.02■□□□□ -0
CCDC88B-203ENST00000359902 IGHV3-64A0A075B6Q5 118 aa15.01□□□□□ -0.01
CCDC88B-203ENST00000359902 IGHV3-38A0A0C4DH36 116 aa15.01□□□□□ -0.01
CCDC88B-203ENST00000359902 RPL24P83731 157 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-203ENST00000359902 PGPEP1Q9NXJ5 209 aa15.01□□□□□ -0.01
CCDC88B-203ENST00000359902 J3QKU1 62 aa15.01□□□□□ -0.01
CCDC88B-203ENST00000359902 RNASE13Q5GAN3 156 aaKnown RBP15.01□□□□□ -0.01
CCDC88B-203ENST00000359902 SPANXA1Q9NS26 97 aa15.01□□□□□ -0.01
CCDC88B-203ENST00000359902 IGKV2D-29A0A075B6S2 120 aaPredicted RBP15□□□□□ -0.01
CCDC88B-203ENST00000359902 IGKV2-29A2NJV5 120 aaPredicted RBP15□□□□□ -0.01
CCDC88B-203ENST00000359902 ANK3Q12955 4377 aaKnown RBP15□□□□□ -0.01
CCDC88B-203ENST00000359902 TRGV1A0A0A0MS02 117 aa14.99□□□□□ -0.01
CCDC88B-203ENST00000359902 H3BMG7 143 aa14.99□□□□□ -0.01
CCDC88B-203ENST00000359902 ITPR2Q14571 2701 aa14.99□□□□□ -0.01
CCDC88B-203ENST00000359902 SETD2Q9BYW2 2564 aaPredicted RBP14.98□□□□□ -0.01
CCDC88B-203ENST00000359902 TEX48A0A1B0GUV7 120 aa14.97□□□□□ -0.01
CCDC88B-203ENST00000359902 APOMO95445 188 aa14.97□□□□□ -0.01
CCDC88B-203ENST00000359902 GIG44P09565 113 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-203ENST00000359902 SCGB1A1P11684 91 aa14.97□□□□□ -0.01
CCDC88B-203ENST00000359902 NDUFA11Q86Y39 141 aa14.97□□□□□ -0.01
CCDC88B-203ENST00000359902 CMC4P56277 68 aaPredicted RBP14.97□□□□□ -0.01
CCDC88B-203ENST00000359902 F8W1H4 67 aa14.96□□□□□ -0.01
CCDC88B-203ENST00000359902 IGHV3-30-3P0DP02 117 aa14.96□□□□□ -0.01
CCDC88B-203ENST00000359902 TMEM263Q8WUH6 116 aaKnown RBP14.96□□□□□ -0.01
CCDC88B-203ENST00000359902 ADARB2-AS1A8MUL3 147 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 TSPAN13O95857 204 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 IGLV1-51P01701 117 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 CFC1BP0CG36 223 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 CFC1P0CG37 223 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 Q6ZTI0 123 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 Q6ZUT4 128 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 MTORP42345 2549 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 TINCRA0A1B0GVN0 87 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 C10orf126Q8N4M7 172 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 TIMM21Q9BVV7 248 aa14.95□□□□□ -0.02
CCDC88B-203ENST00000359902 NIPBLQ6KC79 2804 aaeCLIP14.94□□□□□ -0.02
CCDC88B-203ENST00000359902 J3QR89 54 aa14.94□□□□□ -0.02
CCDC88B-203ENST00000359902 HILS1P60008 231 aa14.94□□□□□ -0.02
CCDC88B-203ENST00000359902 WFDC2Q14508 124 aa14.94□□□□□ -0.02
CCDC88B-203ENST00000359902 ZNF418Q8TF45 676 aaPredicted RBP14.94□□□□□ -0.02
CCDC88B-203ENST00000359902 SIGMAR1Q99720 223 aa14.94□□□□□ -0.02
CCDC88B-203ENST00000359902 WFDC10AQ9H1F0 79 aa14.94□□□□□ -0.02
CCDC88B-203ENST00000359902 C19orf73Q9NVV2 129 aa14.94□□□□□ -0.02
CCDC88B-203ENST00000359902 TRAV8-3A0A0A6YYJ7 113 aa14.93□□□□□ -0.02
CCDC88B-203ENST00000359902 FAM110AQ9BQ89 295 aa14.92□□□□□ -0.02
CCDC88B-203ENST00000359902 SETXQ7Z333 2677 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-203ENST00000359902 IGHV1-58A0A0C4DH39 117 aa14.92□□□□□ -0.02
CCDC88B-203ENST00000359902 A0A0J9YXY3 114 aa14.92□□□□□ -0.02
CCDC88B-203ENST00000359902 HELZ2Q9BYK8 2649 aaKnown RBP14.91□□□□□ -0.02
CCDC88B-203ENST00000359902 GAGE13Q4V321 117 aa14.91□□□□□ -0.02
CCDC88B-203ENST00000359902 PRO0461Q9UI25 63 aa14.91□□□□□ -0.02
CCDC88B-203ENST00000359902 TRAV4A0A0B4J268 109 aa14.91□□□□□ -0.02
CCDC88B-203ENST00000359902 GTSF1LQ9H1H1 148 aa14.91□□□□□ -0.02
CCDC88B-203ENST00000359902 NOP10Q9NPE3 64 aaKnown RBP14.91□□□□□ -0.02
CCDC88B-203ENST00000359902 NDUFA7O95182 113 aa14.9□□□□□ -0.02
CCDC88B-203ENST00000359902 RPL35AP18077 110 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-203ENST00000359902 UBE2D3P61077 147 aa14.9□□□□□ -0.02
CCDC88B-203ENST00000359902 UBE2D2P62837 147 aa14.9□□□□□ -0.02
CCDC88B-203ENST00000359902 DAZ2Q13117 558 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-203ENST00000359902 SFTA2Q6UW10 78 aa14.9□□□□□ -0.02
CCDC88B-203ENST00000359902 VSIG2Q96IQ7 327 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms