RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 ATRAIDQ6UW56 229 aa13.28□□□□□ -0.28
SYNE2-201ENST00000341472 CTDSP1Q9GZU7 261 aa13.28□□□□□ -0.28
SYNE2-201ENST00000341472 FAM30AQ9NZY2 134 aa13.28□□□□□ -0.28
SYNE2-201ENST00000341472 ANGP03950 147 aaKnown RBP13.27□□□□□ -0.29
SYNE2-201ENST00000341472 INAFM2P0DMQ5 153 aa13.27□□□□□ -0.29
SYNE2-201ENST00000341472 NTF3P20783 257 aa13.27□□□□□ -0.29
SYNE2-201ENST00000341472 MPV17L2Q567V2 206 aa13.27□□□□□ -0.29
SYNE2-201ENST00000341472 Q5VSD8 79 aa13.27□□□□□ -0.29
SYNE2-201ENST00000341472 ENHOQ6UWT2 76 aa13.27□□□□□ -0.29
SYNE2-201ENST00000341472 C1orf43Q9BWL3 253 aa13.27□□□□□ -0.29
SYNE2-201ENST00000341472 C7orf77A4D0Y5 90 aa13.26□□□□□ -0.29
SYNE2-201ENST00000341472 FAM229AH3BQW9 127 aa13.26□□□□□ -0.29
SYNE2-201ENST00000341472 CRPP02741 224 aa13.26□□□□□ -0.29
SYNE2-201ENST00000341472 GAGE6Q13070 117 aa13.26□□□□□ -0.29
SYNE2-201ENST00000341472 V9GYV3 84 aa13.26□□□□□ -0.29
SYNE2-201ENST00000341472 TRBV25-1A0A075B6N4 114 aa13.25□□□□□ -0.29
SYNE2-201ENST00000341472 FAM231BA6NCW3 169 aa13.25□□□□□ -0.29
SYNE2-201ENST00000341472 ATP6V1G1O75348 118 aa13.25□□□□□ -0.29
SYNE2-201ENST00000341472 RASL11AQ6T310 242 aa13.25□□□□□ -0.29
SYNE2-201ENST00000341472 DPH3P1Q9H4G8 78 aa13.25□□□□□ -0.29
SYNE2-201ENST00000341472 TMEM242Q9NWH2 141 aa13.25□□□□□ -0.29
SYNE2-201ENST00000341472 IGHV1-24A0A0C4DH33 117 aa13.24□□□□□ -0.29
SYNE2-201ENST00000341472 RBX1P62877 108 aa13.24□□□□□ -0.29
SYNE2-201ENST00000341472 TWIST1Q15672 202 aa13.24□□□□□ -0.29
SYNE2-201ENST00000341472 IQCJQ1A5X6 159 aa13.24□□□□□ -0.29
SYNE2-201ENST00000341472 TSKUQ8WUA8 353 aa13.24□□□□□ -0.29
SYNE2-201ENST00000341472 GFRA4Q9GZZ7 299 aa13.24□□□□□ -0.29
SYNE2-201ENST00000341472 RPS10P5Q9NQ39 176 aa13.24□□□□□ -0.29
SYNE2-201ENST00000341472 CTRLP40313 264 aa13.23□□□□□ -0.29
SYNE2-201ENST00000341472 NIT2Q9NQR4 276 aa13.23□□□□□ -0.29
SYNE2-201ENST00000341472 FOXA3P55318 350 aaPredicted RBP13.22□□□□□ -0.29
SYNE2-201ENST00000341472 MIAQ16674 131 aa13.22□□□□□ -0.29
SYNE2-201ENST00000341472 C14orf177Q52M58 125 aa13.21□□□□□ -0.29
SYNE2-201ENST00000341472 LINC00269Q8N2A0 174 aa13.21□□□□□ -0.29
SYNE2-201ENST00000341472 IMMP2LQ96T52 175 aa13.21□□□□□ -0.29
SYNE2-201ENST00000341472 CNFNQ9BYD5 112 aa13.21□□□□□ -0.29
SYNE2-201ENST00000341472 SMIM27A0A1W2PRY6 76 aa13.2□□□□□ -0.3
SYNE2-201ENST00000341472 LINC01620Q4KN68 170 aa13.2□□□□□ -0.3
SYNE2-201ENST00000341472 PRR34Q9NV39 138 aa13.2□□□□□ -0.3
SYNE2-201ENST00000341472 VPS13BQ7Z7G8 4022 aa13.2□□□□□ -0.3
SYNE2-201ENST00000341472 Q6ZSA8 131 aa13.19□□□□□ -0.3
SYNE2-201ENST00000341472 TMEM243Q9BU79 118 aa13.19□□□□□ -0.3
SYNE2-201ENST00000341472 NAT8BQ9UHF3 227 aa13.19□□□□□ -0.3
SYNE2-201ENST00000341472 SMIM15Q7Z3B0 74 aa13.18□□□□□ -0.3
SYNE2-201ENST00000341472 GTSF1Q8WW33 167 aa13.18□□□□□ -0.3
SYNE2-201ENST00000341472 BORCS7Q96B45 105 aa13.18□□□□□ -0.3
SYNE2-201ENST00000341472 HIGD1CA8MV81 97 aa13.17□□□□□ -0.3
SYNE2-201ENST00000341472 S100PP25815 95 aa13.17□□□□□ -0.3
SYNE2-201ENST00000341472 CLPSL2Q6UWE3 100 aa13.17□□□□□ -0.3
SYNE2-201ENST00000341472 SRRM2Q9UQ35 2752 aaKnown RBP13.17□□□□□ -0.3
SYNE2-201ENST00000341472 GATD1Q8NB37 220 aa13.16□□□□□ -0.3
SYNE2-201ENST00000341472 PGLYRP4Q96LB8 373 aa13.16□□□□□ -0.3
SYNE2-201ENST00000341472 TRAV9-1A0A075B6T8 112 aa13.15□□□□□ -0.3
SYNE2-201ENST00000341472 A0A1B0GUV1 79 aa13.15□□□□□ -0.3
SYNE2-201ENST00000341472 USP17L23D6RBM5 183 aa13.15□□□□□ -0.3
SYNE2-201ENST00000341472 HLA-DQA1P01909 254 aa13.15□□□□□ -0.3
SYNE2-201ENST00000341472 COTL1Q14019 142 aa13.15□□□□□ -0.3
SYNE2-201ENST00000341472 NUP35Q8NFH5 326 aa13.15□□□□□ -0.3
SYNE2-201ENST00000341472 DEFB104AQ8WTQ1 72 aa13.15□□□□□ -0.3
SYNE2-201ENST00000341472 REG3AQ06141 175 aa13.14□□□□□ -0.31
SYNE2-201ENST00000341472 C20orf203Q8NBC4 194 aa13.14□□□□□ -0.31
SYNE2-201ENST00000341472 TRAV26-2A0A0B4J265 109 aa13.13□□□□□ -0.31
SYNE2-201ENST00000341472 A0A1B0GUT8 65 aa13.13□□□□□ -0.31
SYNE2-201ENST00000341472 UBE2L6O14933 153 aa13.13□□□□□ -0.31
SYNE2-201ENST00000341472 AMTP48728 403 aa13.13□□□□□ -0.31
SYNE2-201ENST00000341472 KRTAP26-1Q6PEX3 210 aa13.13□□□□□ -0.31
SYNE2-201ENST00000341472 BTF3L4Q96K17 158 aa13.13□□□□□ -0.31
SYNE2-201ENST00000341472 SMCO4Q9NRQ5 59 aa13.13□□□□□ -0.31
SYNE2-201ENST00000341472 TRAV8-4A0A0B4J246 113 aa13.12□□□□□ -0.31
SYNE2-201ENST00000341472 RIGQ13278 110 aa13.12□□□□□ -0.31
SYNE2-201ENST00000341472 CHAC1Q9BUX1 264 aa13.12□□□□□ -0.31
SYNE2-201ENST00000341472 IGLV4-60A0A075B6I1 120 aa13.11□□□□□ -0.31
SYNE2-201ENST00000341472 A0A1B0GW15 77 aa13.11□□□□□ -0.31
SYNE2-201ENST00000341472 PRSS1P07477 247 aa13.11□□□□□ -0.31
SYNE2-201ENST00000341472 FLG2Q5D862 2391 aaPredicted RBP13.1□□□□□ -0.31
SYNE2-201ENST00000341472 IGLV10-54A0A075B6I4 117 aa13.1□□□□□ -0.31
SYNE2-201ENST00000341472 PLA2G1BP04054 148 aaKnown RBP13.1□□□□□ -0.31
SYNE2-201ENST00000341472 DGAT2L7PQ6IED9 249 aa13.1□□□□□ -0.31
SYNE2-201ENST00000341472 SCXQ7RTU7 201 aa13.1□□□□□ -0.31
SYNE2-201ENST00000341472 ATP5L2Q7Z4Y8 100 aa13.1□□□□□ -0.31
SYNE2-201ENST00000341472 LINC00528Q8N1L1 170 aa13.1□□□□□ -0.31
SYNE2-201ENST00000341472 S100A8P05109 93 aa13.09□□□□□ -0.31
SYNE2-201ENST00000341472 RPL39LQ96EH5 51 aaKnown RBP13.09□□□□□ -0.31
SYNE2-201ENST00000341472 DMBT1Q9UGM3 2413 aaPredicted RBP13.09□□□□□ -0.31
SYNE2-201ENST00000341472 NCR2O95944 276 aa13.08□□□□□ -0.32
SYNE2-201ENST00000341472 HERC1Q15751 4861 aa13.08□□□□□ -0.32
SYNE2-201ENST00000341472 LCE2DQ5TA82 110 aaPredicted RBP13.07□□□□□ -0.32
SYNE2-201ENST00000341472 HBBP68871 147 aa13.06□□□□□ -0.32
SYNE2-201ENST00000341472 COX19Q49B96 90 aa13.06□□□□□ -0.32
SYNE2-201ENST00000341472 CIRBP-AS1Q8TBR5 109 aa13.06□□□□□ -0.32
SYNE2-201ENST00000341472 TRBV24-1A0A075B6N3 115 aa13.05□□□□□ -0.32
SYNE2-201ENST00000341472 SDHAF1A6NFY7 115 aa13.05□□□□□ -0.32
SYNE2-201ENST00000341472 PMCHP20382 165 aa13.05□□□□□ -0.32
SYNE2-201ENST00000341472 AMMECR1LQ6DCA0 310 aa13.05□□□□□ -0.32
SYNE2-201ENST00000341472 MRPL54Q6P161 138 aaKnown RBP13.05□□□□□ -0.32
SYNE2-201ENST00000341472 CBLN2Q8IUK8 224 aa13.05□□□□□ -0.32
SYNE2-201ENST00000341472 C9orf163Q8N9P6 203 aa13.05□□□□□ -0.32
SYNE2-201ENST00000341472 MYCBP2O75592 4640 aa13.05□□□□□ -0.32
SYNE2-201ENST00000341472 A0A1B0GXF2 115 aa13.04□□□□□ -0.32
SYNE2-201ENST00000341472 TRBV6-5A0A0K0K1A5 114 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms