RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 GPR179Q6PRD1 2367 aa9.55□□□□□ -0.88
SDC3-201ENST00000336798 HILS1P60008 231 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 CSDC2Q9Y534 153 aaKnown RBP9.54□□□□□ -0.88
SDC3-201ENST00000336798 ZNF80P51504 273 aaPredicted RBP9.54□□□□□ -0.88
SDC3-201ENST00000336798 SHISA2Q6UWI4 295 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 LINC00467Q9BRT7 94 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 MSMPQ1L6U9 139 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 NDUFA11Q86Y39 141 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 CCDC140Q96MF4 163 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 TRBV10-1A0A0K0K1A3 114 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 C14orf177Q52M58 125 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 C20orf203Q8NBC4 194 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 TEX49A0A1B0GTD5 131 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 USP17L23D6RBM5 183 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 ODF1Q14990 250 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 LINC00643Q86TS7 51 aa9.54□□□□□ -0.88
SDC3-201ENST00000336798 KRTAP27-1Q3LI81 207 aa9.53□□□□□ -0.88
SDC3-201ENST00000336798 IL17DQ8TAD2 202 aa9.53□□□□□ -0.88
SDC3-201ENST00000336798 IGLV1-47P01700 117 aa9.53□□□□□ -0.88
SDC3-201ENST00000336798 IGF1P05019 195 aa9.53□□□□□ -0.88
SDC3-201ENST00000336798 LINC00526Q96FQ7 95 aa9.53□□□□□ -0.88
SDC3-201ENST00000336798 TNCP24821 2201 aa9.53□□□□□ -0.88
SDC3-201ENST00000336798 IGLV2-14P01704 120 aa9.53□□□□□ -0.88
SDC3-201ENST00000336798 INSL3P51460 131 aa9.53□□□□□ -0.88
SDC3-201ENST00000336798 SHANK1Q9Y566 2161 aa9.52□□□□□ -0.88
SDC3-201ENST00000336798 ATRXP46100 2492 aa9.52□□□□□ -0.88
SDC3-201ENST00000336798 ADAMTS9Q9P2N4 1935 aa9.52□□□□□ -0.88
SDC3-201ENST00000336798 IGKV2-28A0A075B6P5 120 aa9.52□□□□□ -0.89
SDC3-201ENST00000336798 IGKV2D-28P01615 120 aa9.52□□□□□ -0.89
SDC3-201ENST00000336798 IGHV4-31P0DP07 118 aa9.52□□□□□ -0.89
SDC3-201ENST00000336798 CTRLP40313 264 aa9.52□□□□□ -0.89
SDC3-201ENST00000336798 DSCAML1Q8TD84 2053 aa9.52□□□□□ -0.89
SDC3-201ENST00000336798 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.52□□□□□ -0.89
SDC3-201ENST00000336798 ARHGAP21Q5T5U3 1957 aa9.52□□□□□ -0.89
SDC3-201ENST00000336798 IGHV4-30-4P0DP06 118 aa9.52□□□□□ -0.89
SDC3-201ENST00000336798 C10orf99Q6UWK7 81 aa9.52□□□□□ -0.89
SDC3-201ENST00000336798 UBE2D1P51668 147 aa9.51□□□□□ -0.89
SDC3-201ENST00000336798 PROK1P58294 105 aa9.51□□□□□ -0.89
SDC3-201ENST00000336798 MIAQ16674 131 aa9.51□□□□□ -0.89
SDC3-201ENST00000336798 UFSP1Q6NVU6 142 aa9.51□□□□□ -0.89
SDC3-201ENST00000336798 KIF26AQ9ULI4 1882 aaPredicted RBP9.51□□□□□ -0.89
SDC3-201ENST00000336798 LY6G6CO95867 125 aa9.51□□□□□ -0.89
SDC3-201ENST00000336798 PIK3CD-AS1Q5SR53 167 aa9.51□□□□□ -0.89
SDC3-201ENST00000336798 MED13LQ71F56 2210 aa9.51□□□□□ -0.89
SDC3-201ENST00000336798 Q8NA96 180 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 NLRC5Q86WI3 1866 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 A0A0J9YXY3 114 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 C3orf84H3BNL1 204 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 TIMM17BO60830 172 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 XGP55808 180 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 ENHOQ6UWT2 76 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 C1orf158Q8N1D5 194 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 MED14OSP0DP75 135 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 UBE2D4Q9Y2X8 147 aa9.5□□□□□ -0.89
SDC3-201ENST00000336798 H3BT86 120 aa9.49□□□□□ -0.89
SDC3-201ENST00000336798 K7ERS5 55 aa9.49□□□□□ -0.89
SDC3-201ENST00000336798 CACNA1HO95180 2353 aa9.49□□□□□ -0.89
SDC3-201ENST00000336798 IGF2-ASQ6U949 168 aa9.49□□□□□ -0.89
SDC3-201ENST00000336798 C9orf85Q96MD7 179 aa9.49□□□□□ -0.89
SDC3-201ENST00000336798 ANAPC1Q9H1A4 1944 aa9.48□□□□□ -0.89
SDC3-201ENST00000336798 TMEM89A2RUT3 159 aa9.48□□□□□ -0.89
SDC3-201ENST00000336798 Q6YL49 198 aa9.48□□□□□ -0.89
SDC3-201ENST00000336798 LINC00322Q6ZN03 302 aaPredicted RBP9.48□□□□□ -0.89
SDC3-201ENST00000336798 Q8N976 141 aa9.48□□□□□ -0.89
SDC3-201ENST00000336798 GDF5OSQ5U4N7 250 aa9.47□□□□□ -0.89
SDC3-201ENST00000336798 CDKN2A-AS1Q9UH64 79 aa9.47□□□□□ -0.89
SDC3-201ENST00000336798 NOTCH4Q99466 2003 aa9.47□□□□□ -0.89
SDC3-201ENST00000336798 DEFB114Q30KQ6 69 aa9.47□□□□□ -0.89
SDC3-201ENST00000336798 IGLV9-49A0A0B4J1Y8 123 aa9.47□□□□□ -0.89
SDC3-201ENST00000336798 C7orf33Q8WU49 177 aa9.47□□□□□ -0.89
SDC3-201ENST00000336798 RPL37AP8A6NKH3 93 aa9.47□□□□□ -0.89
SDC3-201ENST00000336798 NEXN-AS1Q8NBZ9 246 aa9.47□□□□□ -0.89
SDC3-201ENST00000336798 DENND4CQ5VZ89 1909 aa9.46□□□□□ -0.89
SDC3-201ENST00000336798 WFDC10AQ9H1F0 79 aa9.46□□□□□ -0.89
SDC3-201ENST00000336798 TNFRSF13BO14836 293 aaPredicted RBP9.46□□□□□ -0.89
SDC3-201ENST00000336798 BBC3Q96PG8 261 aaPredicted RBP9.46□□□□□ -0.9
SDC3-201ENST00000336798 A8MZ25 164 aa9.45□□□□□ -0.9
SDC3-201ENST00000336798 LMO4P61968 165 aa9.45□□□□□ -0.9
SDC3-201ENST00000336798 PRM2P04554 102 aa9.45□□□□□ -0.9
SDC3-201ENST00000336798 TANC1Q9C0D5 1861 aa9.45□□□□□ -0.9
SDC3-201ENST00000336798 LY6G6DO95868 133 aa9.45□□□□□ -0.9
SDC3-201ENST00000336798 PRR4Q16378 134 aa9.45□□□□□ -0.9
SDC3-201ENST00000336798 LOC107984640A0A0U1RRK4 108 aa9.45□□□□□ -0.9
SDC3-201ENST00000336798 LYRM9A8MSI8 78 aa9.45□□□□□ -0.9
SDC3-201ENST00000336798 UBE2D3P61077 147 aa9.44□□□□□ -0.9
SDC3-201ENST00000336798 C19orf71A6NCJ1 209 aa9.44□□□□□ -0.9
SDC3-201ENST00000336798 WFDC13Q8IUB5 93 aa9.44□□□□□ -0.9
SDC3-201ENST00000336798 KIR2DL5BQ8NHK3 375 aa9.44□□□□□ -0.9
SDC3-201ENST00000336798 PDE6GP18545 87 aa9.44□□□□□ -0.9
SDC3-201ENST00000336798 LOC100131303A0A0U1RQF7 123 aa9.44□□□□□ -0.9
SDC3-201ENST00000336798 C18orf65Q6ZTR6 163 aa9.44□□□□□ -0.9
SDC3-201ENST00000336798 SNURFQ9Y675 71 aa9.44□□□□□ -0.9
SDC3-201ENST00000336798 PRORYQ9H606 182 aa9.43□□□□□ -0.9
SDC3-201ENST00000336798 C22orf34Q6ZV56 151 aa9.43□□□□□ -0.9
SDC3-201ENST00000336798 CFAP126Q5VTH2 177 aa9.43□□□□□ -0.9
SDC3-201ENST00000336798 LY6LH3BQJ8 138 aa9.42□□□□□ -0.9
SDC3-201ENST00000336798 COX7CP15954 63 aa9.42□□□□□ -0.9
SDC3-201ENST00000336798 Q6ZSV7 163 aa9.42□□□□□ -0.9
SDC3-201ENST00000336798 OBSL1O75147 1896 aa9.42□□□□□ -0.9
SDC3-201ENST00000336798 C1orf229Q6ZS94 237 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 113.5 ms