RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 A0A0J9YY99 117 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 IGLV2-8P01709 118 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 GYPEP15421 78 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 SAA4P35542 130 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 PRSS33Q8NF86 280 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 PLA2G2EQ9NZK7 142 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 TCL1BO95988 128 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 FSHBP01225 129 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 GATA1P15976 413 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-201ENST00000303395 BRD3OSQ6XYD6 125 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 COL4A2P08572 1712 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 COL4A3Q01955 1670 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 SMIM26A0A096LP01 95 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 Q9H8V8 135 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 X6R8D5 127 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 NCOR2Q9Y618 2525 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 LST1O00453 97 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 NCR3O14931 201 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 IGLV1-47P01700 117 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 TMEM61Q8N0U2 210 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 SELENOKQ9Y6D0 94 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 A0A0U1RQV1 116 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 ZNF672Q499Z4 452 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-201ENST00000303395 WFDC10BQ8IUB3 73 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 SND1-IT1Q9HBX3 110 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 IGKV3D-7A0A0C4DH55 119 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 RNF223E7ERA6 249 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 Q8N9W7 124 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 LINC01600Q96MT4 127 aa4.06□□□□□ -1.76
SCN1A-201ENST00000303395 A0A087WZ39 114 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 IGHV3-38A0A0C4DH36 116 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 B5MCH6 92 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 RPP25Q9BUL9 199 aaKnown RBP4.05□□□□□ -1.76
SCN1A-201ENST00000303395 OVOL3O00110 214 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 WISP2O76076 250 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 IGKV1-16P04430 117 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 DIAPH2-AS1Q14236 149 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 CCL24O00175 119 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 FXYD2P54710 66 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 MTORP42345 2549 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 SMKR1H3BMG3 65 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 IGKV2D-26A0A0A0MRZ7 120 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 C11orf53Q8IXP5 236 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 C8orf49Q96NF6 230 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 CHCHD7Q9BUK0 85 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 IGLV10-54A0A075B6I4 117 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 FAM120AOSQ5T036 256 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 LINC00467Q9BRT7 94 aa4.05□□□□□ -1.76
SCN1A-201ENST00000303395 A0A087WV48 116 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 PROK2Q9HC23 129 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 IGLV2-14P01704 120 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 IGLV2-23P01705 113 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 CRYGBP07316 175 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 ZNF80P51504 273 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-201ENST00000303395 FGF23Q9GZV9 251 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-201ENST00000303395 SPRR3Q9UBC9 169 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 SMIM9A6NGZ8 99 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 J3QKU1 62 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 C2orf91Q6ZV80 131 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 IGHV3-30P01768 117 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 IGHV3-33P01772 117 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 IGF1P05019 195 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 IGHV3-30-3P0DP02 117 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 IGHV3-30-5P0DP03 117 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 CRIP2P52943 208 aaPredicted RBP4.04□□□□□ -1.76
SCN1A-201ENST00000303395 KLK9Q2XQG4 91 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 WDR86Q86TI4 376 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 ZNF295-AS1Q8N0V1 137 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 AGPAT4-IT1Q9H0P7 198 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 COX7BP24311 80 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 UNQ6494/PRO21346Q6UXR6 183 aa4.04□□□□□ -1.76
SCN1A-201ENST00000303395 NRACQ8N912 160 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 K7EQD1 137 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 CRYGAP11844 174 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 C5orf38Q86SI9 138 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 TRBV7-3A0A075B6L6 115 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 ATP1A1-AS1Q5TC04 95 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 DKK2Q9UBU2 259 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 ERC2-IT1O76042 136 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 Q6ZR03 302 aa4.03□□□□□ -1.76
SCN1A-201ENST00000303395 HIGD2AQ9BW72 106 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 HHLA3Q9XRX5 114 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 IGHV4-61A0A0C4DH41 118 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 SERTAD4-AS1Q5TG53 156 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 PATE2Q6UY27 113 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 SMAD5-AS1Q9Y6J3 95 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 INSL3P51460 131 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 DEFB112Q30KQ8 113 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 TP53TG3Q9ULZ0 132 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 IGHV4-38-2P0DP08 117 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 A0A0J9YWU9 116 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 SBSPONQ8IVN8 264 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 PSMG3-AS1Q96PY0 264 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 IGKV2-24A0A0C4DH68 120 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 ZNF22P17026 224 aaPredicted RBP4.02□□□□□ -1.77
SCN1A-201ENST00000303395 SPAG11BQ08648 103 aa4.02□□□□□ -1.77
SCN1A-201ENST00000303395 RNASE13Q5GAN3 156 aaKnown RBP4.01□□□□□ -1.77
SCN1A-201ENST00000303395 LYNX1G3V0Z9 82 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 LYNX1P0DP58 116 aa4.01□□□□□ -1.77
SCN1A-201ENST00000303395 SPINK6Q6UWN8 80 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms