RNA–Protein interactions for RNA: ENST00000263351.9

ZNF541-201, Transcript of zinc finger protein 541, humanhuman

TSL 1 (best)

Gene ZNF541, Length 2,573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541-201ENST00000263351 SLURP1P55000 103 aa12.11□□□□□ -0.47
ZNF541-201ENST00000263351 TRBV7-9A0A0J9YWB2 115 aa12.11□□□□□ -0.47
ZNF541-201ENST00000263351 RBMY1BA6NDE4 496 aaKnown RBP12.11□□□□□ -0.47
ZNF541-201ENST00000263351 RBMY1EA6NEQ0 496 aaKnown RBP12.11□□□□□ -0.47
ZNF541-201ENST00000263351 IGHV3-33P01772 117 aa12.11□□□□□ -0.47
ZNF541-201ENST00000263351 RBMY1DP0C7P1 496 aaKnown RBP12.11□□□□□ -0.47
ZNF541-201ENST00000263351 SNRPD3P62318 126 aaKnown RBP12.11□□□□□ -0.47
ZNF541-201ENST00000263351 RPL32P62910 135 aaKnown RBP12.11□□□□□ -0.47
ZNF541-201ENST00000263351 Q1RN00 199 aa12.11□□□□□ -0.47
ZNF541-201ENST00000263351 Q6ZUT4 128 aa12.11□□□□□ -0.47
ZNF541-201ENST00000263351 TEN1Q86WV5 123 aa12.11□□□□□ -0.47
ZNF541-201ENST00000263351 TMEM263Q8WUH6 116 aaKnown RBP12.11□□□□□ -0.47
ZNF541-201ENST00000263351 VCX2Q9H322 139 aa12.11□□□□□ -0.47
ZNF541-201ENST00000263351 PRSS2P07478 247 aa12.1□□□□□ -0.47
ZNF541-201ENST00000263351 CD28P10747 220 aa12.1□□□□□ -0.47
ZNF541-201ENST00000263351 HOXD3P31249 432 aaPredicted RBP12.1□□□□□ -0.47
ZNF541-201ENST00000263351 SETXQ7Z333 2677 aaKnown RBP12.1□□□□□ -0.47
ZNF541-201ENST00000263351 K7EMT4 169 aa12.1□□□□□ -0.47
ZNF541-201ENST00000263351 BRI3O95415 125 aa12.1□□□□□ -0.47
ZNF541-201ENST00000263351 IGHV3-30-3P0DP02 117 aa12.1□□□□□ -0.47
ZNF541-201ENST00000263351 NSUN5P1Q3KNT7 163 aa12.1□□□□□ -0.47
ZNF541-201ENST00000263351 PAPPA-AS1Q5QFB9 102 aa12.1□□□□□ -0.47
ZNF541-201ENST00000263351 A0A0J9YXY3 114 aa12.09□□□□□ -0.47
ZNF541-201ENST00000263351 LEPROTO15243 131 aa12.09□□□□□ -0.47
ZNF541-201ENST00000263351 GATA3P23771 443 aa12.09□□□□□ -0.47
ZNF541-201ENST00000263351 A8MWV9 139 aa12.09□□□□□ -0.47
ZNF541-201ENST00000263351 I3L3M4 83 aa12.09□□□□□ -0.47
ZNF541-201ENST00000263351 DEFB131AP59861 70 aa12.09□□□□□ -0.47
ZNF541-201ENST00000263351 SLC25A20O43772 301 aa12.08□□□□□ -0.48
ZNF541-201ENST00000263351 PPDPFLQ8WWR9 84 aa12.08□□□□□ -0.48
ZNF541-201ENST00000263351 TRAV26-1A0A087WT03 109 aa12.07□□□□□ -0.48
ZNF541-201ENST00000263351 A0A0U1RRA0 63 aa12.07□□□□□ -0.48
ZNF541-201ENST00000263351 CIDEAO60543 219 aa12.07□□□□□ -0.48
ZNF541-201ENST00000263351 TCTEX1D4Q5JR98 221 aa12.07□□□□□ -0.48
ZNF541-201ENST00000263351 LITAFQ99732 161 aa12.06□□□□□ -0.48
ZNF541-201ENST00000263351 SCGB1A1P11684 91 aa12.06□□□□□ -0.48
ZNF541-201ENST00000263351 CRYBA4P53673 196 aa12.06□□□□□ -0.48
ZNF541-201ENST00000263351 NTN5Q8WTR8 489 aaPredicted RBP12.06□□□□□ -0.48
ZNF541-201ENST00000263351 ERG28Q9UKR5 140 aa12.06□□□□□ -0.48
ZNF541-201ENST00000263351 TEX49A0A1B0GTD5 131 aa12.05□□□□□ -0.48
ZNF541-201ENST00000263351 TRIAP1O43715 76 aa12.05□□□□□ -0.48
ZNF541-201ENST00000263351 NDUFA7O95182 113 aa12.05□□□□□ -0.48
ZNF541-201ENST00000263351 RHOHQ15669 191 aa12.05□□□□□ -0.48
ZNF541-201ENST00000263351 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.05□□□□□ -0.48
ZNF541-201ENST00000263351 ATP6V0E2Q8NHE4 81 aa12.05□□□□□ -0.48
ZNF541-201ENST00000263351 GEMIN7Q9H840 131 aaKnown RBP12.05□□□□□ -0.48
ZNF541-201ENST00000263351 TIMM21Q9BVV7 248 aa12.04□□□□□ -0.48
ZNF541-201ENST00000263351 A0A1B0GV72 72 aa12.04□□□□□ -0.48
ZNF541-201ENST00000263351 B4DSR2 109 aa12.04□□□□□ -0.48
ZNF541-201ENST00000263351 M0R2P5 195 aa12.04□□□□□ -0.48
ZNF541-201ENST00000263351 CRLF1O75462 422 aa12.04□□□□□ -0.48
ZNF541-201ENST00000263351 CLEC2BQ92478 149 aa12.04□□□□□ -0.48
ZNF541-201ENST00000263351 ZNF625Q96I27 306 aaPredicted RBP12.04□□□□□ -0.48
ZNF541-201ENST00000263351 LINC00467Q9BRT7 94 aa12.04□□□□□ -0.48
ZNF541-201ENST00000263351 PRORYQ9H606 182 aa12.04□□□□□ -0.48
ZNF541-201ENST00000263351 SBSPONQ8IVN8 264 aa12.03□□□□□ -0.48
ZNF541-201ENST00000263351 KHDC1LQ5JSQ8 128 aa12.02□□□□□ -0.48
ZNF541-201ENST00000263351 MTORP42345 2549 aa12.02□□□□□ -0.49
ZNF541-201ENST00000263351 TMEM61Q8N0U2 210 aa12.02□□□□□ -0.49
ZNF541-201ENST00000263351 C11orf44Q8N8P7 122 aa12.02□□□□□ -0.49
ZNF541-201ENST00000263351 TRBV20-1A0A075B6N2 111 aa12.01□□□□□ -0.49
ZNF541-201ENST00000263351 IGHV3OR16-12A0A075B7B8 117 aa12.01□□□□□ -0.49
ZNF541-201ENST00000263351 RNF183Q96D59 192 aa12.01□□□□□ -0.49
ZNF541-201ENST00000263351 CHCHD7Q9BUK0 85 aa12.01□□□□□ -0.49
ZNF541-201ENST00000263351 NDUFA12Q9UI09 145 aa12.01□□□□□ -0.49
ZNF541-201ENST00000263351 TNFRSF18Q9Y5U5 241 aa12.01□□□□□ -0.49
ZNF541-201ENST00000263351 ACANP16112 2415 aa12.01□□□□□ -0.49
ZNF541-201ENST00000263351 ZNF702PQ9H963 129 aa12□□□□□ -0.49
ZNF541-201ENST00000263351 FN1P02751 2386 aaKnown RBP12□□□□□ -0.49
ZNF541-201ENST00000263351 CDKN2A-AS1Q9UH64 79 aa11.99□□□□□ -0.49
ZNF541-201ENST00000263351 COX6A2Q02221 97 aa11.99□□□□□ -0.49
ZNF541-201ENST00000263351 LINC01620Q4KN68 170 aa11.99□□□□□ -0.49
ZNF541-201ENST00000263351 ODF3Q96PU9 254 aa11.99□□□□□ -0.49
ZNF541-201ENST00000263351 H3BMM0 161 aa11.98□□□□□ -0.49
ZNF541-201ENST00000263351 PRB1P04280 392 aa11.98□□□□□ -0.49
ZNF541-201ENST00000263351 MRPS36P82909 103 aaKnown RBP11.98□□□□□ -0.49
ZNF541-201ENST00000263351 LYRM7Q5U5X0 104 aa11.98□□□□□ -0.49
ZNF541-201ENST00000263351 UBE2D4Q9Y2X8 147 aa11.98□□□□□ -0.49
ZNF541-201ENST00000263351 NBEAL2Q6ZNJ1 2754 aa11.98□□□□□ -0.49
ZNF541-201ENST00000263351 APCP25054 2843 aa11.98□□□□□ -0.49
ZNF541-201ENST00000263351 TRAV4A0A0B4J268 109 aa11.98□□□□□ -0.49
ZNF541-201ENST00000263351 ITPR3Q14573 2671 aa11.97□□□□□ -0.49
ZNF541-201ENST00000263351 TRGV11A0A075B6L2 103 aa11.97□□□□□ -0.49
ZNF541-201ENST00000263351 A0A0B4J2C4 111 aa11.97□□□□□ -0.49
ZNF541-201ENST00000263351 IGHV3-53P01767 116 aa11.97□□□□□ -0.49
ZNF541-201ENST00000263351 UBE2E2Q96LR5 201 aa11.97□□□□□ -0.49
ZNF541-201ENST00000263351 XCL2Q9UBD3 114 aa11.97□□□□□ -0.49
ZNF541-201ENST00000263351 USP24Q9UPU5 2620 aa11.96□□□□□ -0.49
ZNF541-201ENST00000263351 IGHV1-58A0A0C4DH39 117 aa11.96□□□□□ -0.49
ZNF541-201ENST00000263351 LINC01587Q99440 93 aa11.96□□□□□ -0.49
ZNF541-201ENST00000263351 LINC00694P0DN24 101 aa11.96□□□□□ -0.5
ZNF541-201ENST00000263351 KRTAP10-9P60411 292 aa11.96□□□□□ -0.5
ZNF541-201ENST00000263351 VSIG2Q96IQ7 327 aa11.96□□□□□ -0.5
ZNF541-201ENST00000263351 FLNAP21333 2647 aaKnown RBP11.95□□□□□ -0.5
ZNF541-201ENST00000263351 VPREB3Q9UKI3 123 aa11.94□□□□□ -0.5
ZNF541-201ENST00000263351 ICOSQ9Y6W8 199 aa11.94□□□□□ -0.5
ZNF541-201ENST00000263351 A0A096LNT2 108 aa11.94□□□□□ -0.5
ZNF541-201ENST00000263351 CR1P17927 2039 aa11.94□□□□□ -0.5
ZNF541-201ENST00000263351 H7C423 109 aa11.93□□□□□ -0.5
ZNF541-201ENST00000263351 LINC01356Q8N9X3 169 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms