RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 TIMM21Q9BVV7 248 aa9.07□□□□□ -0.96
NUP88-201ENST00000225696 NIPBLQ6KC79 2804 aaeCLIP9.07□□□□□ -0.96
NUP88-201ENST00000225696 SNRPD3P62318 126 aaKnown RBP9.07□□□□□ -0.96
NUP88-201ENST00000225696 PIMREGQ9BSJ6 248 aa9.07□□□□□ -0.96
NUP88-201ENST00000225696 MYO9AB2RTY4 2548 aa9.07□□□□□ -0.96
NUP88-201ENST00000225696 PIEZO1Q92508 2521 aa9.07□□□□□ -0.96
NUP88-201ENST00000225696 FBN2P35556 2912 aa9.07□□□□□ -0.96
NUP88-201ENST00000225696 ZFAND6Q6FIF0 208 aa9.06□□□□□ -0.96
NUP88-201ENST00000225696 DAND5Q8N907 189 aa9.06□□□□□ -0.96
NUP88-201ENST00000225696 ODF3Q96PU9 254 aa9.06□□□□□ -0.96
NUP88-201ENST00000225696 ANAPC13Q9BS18 74 aa9.06□□□□□ -0.96
NUP88-201ENST00000225696 GNLYP22749 145 aa9.06□□□□□ -0.96
NUP88-201ENST00000225696 MRPS36P82909 103 aaKnown RBP9.06□□□□□ -0.96
NUP88-201ENST00000225696 ATXN8Q156A1 80 aa9.06□□□□□ -0.96
NUP88-201ENST00000225696 TEX29Q8N6K0 151 aa9.05□□□□□ -0.96
NUP88-201ENST00000225696 CLEC2BQ92478 149 aa9.05□□□□□ -0.96
NUP88-201ENST00000225696 C2CD3Q4AC94 2353 aa9.05□□□□□ -0.96
NUP88-201ENST00000225696 IGKV2D-29A0A075B6S2 120 aaPredicted RBP9.05□□□□□ -0.96
NUP88-201ENST00000225696 TRAV16A0A0A6YYK6 109 aaPredicted RBP9.05□□□□□ -0.96
NUP88-201ENST00000225696 IGKV2-29A2NJV5 120 aaPredicted RBP9.05□□□□□ -0.96
NUP88-201ENST00000225696 TMEM262E9PQX1 116 aa9.05□□□□□ -0.96
NUP88-201ENST00000225696 M0QXV9 152 aa9.05□□□□□ -0.96
NUP88-201ENST00000225696 MSMBP08118 114 aa9.05□□□□□ -0.96
NUP88-201ENST00000225696 NDUFA12Q9UI09 145 aa9.05□□□□□ -0.96
NUP88-201ENST00000225696 PKD1L2Q7Z442 2459 aa9.04□□□□□ -0.96
NUP88-201ENST00000225696 TRBV30A0A0K0K1B3 111 aa9.04□□□□□ -0.96
NUP88-201ENST00000225696 H7C423 109 aa9.04□□□□□ -0.96
NUP88-201ENST00000225696 NBPF19A0A087WUL8 3843 aa9.04□□□□□ -0.96
NUP88-201ENST00000225696 CACNA1AO00555 2505 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 IGHV3-38A0A0C4DH36 116 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 IGHV1-58A0A0C4DH39 117 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 CCL19Q99731 98 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 ICOSQ9Y6W8 199 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 CHD6Q8TD26 2715 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 TRBV10-2A0A0K0K1G8 114 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 DEFB112Q30KQ8 113 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.03□□□□□ -0.96
NUP88-201ENST00000225696 NRGNQ92686 78 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 VSIG2Q96IQ7 327 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 CHCHD7Q9BUK0 85 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 SS18L2Q9UHA2 77 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 PYGO1Q9Y3Y4 419 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 MYO18BQ8IUG5 2567 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 NOTCH3Q9UM47 2321 aa9.03□□□□□ -0.96
NUP88-201ENST00000225696 RBMY1BA6NDE4 496 aaKnown RBP9.02□□□□□ -0.97
NUP88-201ENST00000225696 RBMY1EA6NEQ0 496 aaKnown RBP9.02□□□□□ -0.97
NUP88-201ENST00000225696 RBMY1DP0C7P1 496 aaKnown RBP9.02□□□□□ -0.97
NUP88-201ENST00000225696 ATP5J2P56134 94 aa9.02□□□□□ -0.97
NUP88-201ENST00000225696 HIST2H2BDQ6DRA6 164 aa9.02□□□□□ -0.97
NUP88-201ENST00000225696 C18orf65Q6ZTR6 163 aa9.02□□□□□ -0.97
NUP88-201ENST00000225696 LINC00467Q9BRT7 94 aa9.02□□□□□ -0.97
NUP88-201ENST00000225696 UBE2D4Q9Y2X8 147 aa9.02□□□□□ -0.97
NUP88-201ENST00000225696 TEX15Q9BXT5 2789 aa9.01□□□□□ -0.97
NUP88-201ENST00000225696 B5MCH6 92 aa9.01□□□□□ -0.97
NUP88-201ENST00000225696 HOXD3P31249 432 aaPredicted RBP9.01□□□□□ -0.97
NUP88-201ENST00000225696 RPL13AP40429 203 aaKnown RBP9.01□□□□□ -0.97
NUP88-201ENST00000225696 DEFB136Q30KP8 78 aa9.01□□□□□ -0.97
NUP88-201ENST00000225696 C2orf82Q6UX34 121 aa9.01□□□□□ -0.97
NUP88-201ENST00000225696 TNFRSF18Q9Y5U5 241 aa9.01□□□□□ -0.97
NUP88-201ENST00000225696 NF1P21359 2839 aa9.01□□□□□ -0.97
NUP88-201ENST00000225696 DOPEY1Q5JWR5 2465 aa9.01□□□□□ -0.97
NUP88-201ENST00000225696 TRGV11A0A075B6L2 103 aa9□□□□□ -0.97
NUP88-201ENST00000225696 SNCGO76070 127 aa9□□□□□ -0.97
NUP88-201ENST00000225696 GAGE2BQ13066 116 aa9□□□□□ -0.97
NUP88-201ENST00000225696 MIAQ16674 131 aa9□□□□□ -0.97
NUP88-201ENST00000225696 GAGE2EQ4V326 116 aa9□□□□□ -0.97
NUP88-201ENST00000225696 DUX3Q96PT4 197 aa9□□□□□ -0.97
NUP88-201ENST00000225696 GAGE2DQ9UEU5 116 aa9□□□□□ -0.97
NUP88-201ENST00000225696 NDUFV3P56181 108 aaKnown RBP9□□□□□ -0.97
NUP88-201ENST00000225696 MAPK1IP1LQ8NDC0 245 aa9□□□□□ -0.97
NUP88-201ENST00000225696 SPANXDQ9BXN6 97 aa9□□□□□ -0.97
NUP88-201ENST00000225696 SPANXCQ9NY87 97 aa9□□□□□ -0.97
NUP88-201ENST00000225696 CDKN2A-AS1Q9UH64 79 aa9□□□□□ -0.97
NUP88-201ENST00000225696 ZNF469Q96JG9 3925 aaPredicted RBP9□□□□□ -0.97
NUP88-201ENST00000225696 ANKRD17O75179 2603 aaKnown RBP8.99□□□□□ -0.97
NUP88-201ENST00000225696 TRAV8-4A0A0B4J246 113 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 H3BMM0 161 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 DEFB131AP59861 70 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 TMEM61Q8N0U2 210 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 C15orf53Q8NAA6 179 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 UBE2WQ96B02 151 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 LINC01600Q96MT4 127 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 TINCRA0A1B0GVN0 87 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 CCDC179H3BU77 68 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 COX6A2Q02221 97 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 TTC32Q5I0X7 151 aa8.99□□□□□ -0.97
NUP88-201ENST00000225696 IGSF10Q6WRI0 2623 aa8.98□□□□□ -0.97
NUP88-201ENST00000225696 A0A0U1RRA0 63 aa8.98□□□□□ -0.97
NUP88-201ENST00000225696 EPG5Q9HCE0 2579 aa8.98□□□□□ -0.97
NUP88-201ENST00000225696 TLN2Q9Y4G6 2542 aa8.97□□□□□ -0.97
NUP88-201ENST00000225696 SLURP1P55000 103 aa8.97□□□□□ -0.97
NUP88-201ENST00000225696 GAGE5Q13069 117 aa8.97□□□□□ -0.97
NUP88-201ENST00000225696 GAGE6Q13070 117 aa8.97□□□□□ -0.97
NUP88-201ENST00000225696 ZNF625Q96I27 306 aaPredicted RBP8.97□□□□□ -0.97
NUP88-201ENST00000225696 CITED2Q99967 270 aaPredicted RBP8.97□□□□□ -0.97
NUP88-201ENST00000225696 EDA2RQ9HAV5 297 aa8.97□□□□□ -0.97
NUP88-201ENST00000225696 NDUFA7O95182 113 aa8.97□□□□□ -0.97
NUP88-201ENST00000225696 RNF152Q8N8N0 203 aa8.97□□□□□ -0.97
NUP88-201ENST00000225696 TMEM101Q96IK0 257 aa8.96□□□□□ -0.97
NUP88-201ENST00000225696 SETD2Q9BYW2 2564 aaPredicted RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 90 ms