RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 TNRC6BQ9UPQ9 1833 aaKnown RBP3.87□□□□□ -1.79
SCN1A-218ENST00000640036 NOTCH1P46531 2555 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 C3orf84H3BNL1 204 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 TRBV12-3P01733 135 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 LINC00322Q6ZN03 302 aaPredicted RBP3.87□□□□□ -1.79
SCN1A-218ENST00000640036 CEND1Q8N111 149 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 NAA38Q9BRA0 125 aaKnown RBP3.87□□□□□ -1.79
SCN1A-218ENST00000640036 A0A087WZ39 114 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 CCL25O15444 150 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 WDR86Q86TI4 376 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 NDUFA1O15239 70 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 RPL23P62829 140 aaKnown RBP3.87□□□□□ -1.79
SCN1A-218ENST00000640036 HLA-DRB4P13762 266 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 HLA-DRB4X5D2U9 266 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 A0A1B0GVG6 124 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 Q6ZS49 121 aa3.87□□□□□ -1.79
SCN1A-218ENST00000640036 IGHV3-38A0A0C4DH36 116 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 SH2D1AO60880 128 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 IGLV5-52A0A0A0MRZ9 124 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 ODF3BA8MYP8 253 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 PFN2P35080 140 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 OPRPNQ99935 248 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-218ENST00000640036 BPTFQ12830 3046 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 IGLV10-54A0A075B6I4 117 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 SCO2A0A1W2PP80 73 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 LGALS9O00182 355 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 TMEM75Q8N9X5 138 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 MAP6D1Q9H9H5 199 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 DIAPH2-AS1Q14236 149 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 UPK3BQ9BT76 320 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 K7EQD1 137 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 PSMB8P28062 276 aa3.86□□□□□ -1.79
SCN1A-218ENST00000640036 KPRPQ5T749 579 aaPredicted RBP3.86□□□□□ -1.79
SCN1A-218ENST00000640036 FOXA3P55318 350 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-218ENST00000640036 TPSG1Q9NRR2 321 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 LINC00474Q9P2X8 69 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 CPAMD8Q8IZJ3 1885 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 C15orf65H3BRN8 121 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 LTAP01374 205 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 Q8N976 141 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 AGMATQ9BSE5 352 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 WISP2O76076 250 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 NXPH4O95158 308 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 UBE2D3P61077 147 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 KIR3DS1Q14943 382 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 GTSF1LQ9H1H1 148 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 ZNF706Q9Y5V0 76 aaPredicted RBP3.85□□□□□ -1.79
SCN1A-218ENST00000640036 IGHV3-64A0A075B6Q5 118 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 SMIM27A0A1W2PRY6 76 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 PRYO14603 147 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 NANOS2P60321 138 aaKnown RBP3.85□□□□□ -1.79
SCN1A-218ENST00000640036 KRTAP24-1Q3LI83 254 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 SLC25A29Q8N8R3 303 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 G3V4G9 280 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 IGKV4-1P06312 121 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 LINC00205P59089 165 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 C16orf54Q6UWD8 224 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 C20orf78Q9BR46 151 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 C16orf95Q9H693 158 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 COL4A3Q01955 1670 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 TRBV24-1A0A075B6N3 115 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 C16orf90A8MZG2 172 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 SYS1-DBNDD2H3BUS1 97 aa3.85□□□□□ -1.79
SCN1A-218ENST00000640036 A0A0B4J2C4 111 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 IGKV2D-26A0A0A0MRZ7 120 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 PRR20EP86478 221 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 PRR20CP86479 221 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 PRR20DP86480 221 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 PRR20BP86481 221 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 PRR20AP86496 221 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 ZNF702PQ9H963 129 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 SERF1AO75920 110 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 NMBP08949 121 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 IGLV1-47P01700 117 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 QRFPP83859 136 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 C9orf85Q96MD7 179 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 TRBV7-3A0A075B6L6 115 aa3.84□□□□□ -1.79
SCN1A-218ENST00000640036 IGLV11-55A0A075B6I3 123 aa3.84□□□□□ -1.8
SCN1A-218ENST00000640036 IGLC1P0CG04 106 aa3.84□□□□□ -1.8
SCN1A-218ENST00000640036 GUSBP1Q15486 140 aa3.84□□□□□ -1.8
SCN1A-218ENST00000640036 MLANAQ16655 118 aa3.84□□□□□ -1.8
SCN1A-218ENST00000640036 FGF6P10767 208 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 WT1-ASQ06250 92 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 RTBDNQ9BSG5 229 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-218ENST00000640036 C9orf118A6NHY6 69 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 PRB4P10163 310 aaPredicted RBP3.83□□□□□ -1.8
SCN1A-218ENST00000640036 TEN1Q86WV5 123 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 TRAV4A0A0B4J268 109 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 NDUFC2-KCTD14E9PQ53 114 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 H3BRN7 92 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 CXCL3P19876 107 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 LYZL1Q6UWQ5 148 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 DEFB104AQ8WTQ1 72 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 PRSS46E5RG02 174 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 SPRNQ5BIV9 151 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 C11orf53Q8IXP5 236 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 TRBV19A0A075B6N1 114 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 IGHV4-28A0A0C4DH34 117 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 GAGE12HA6NDE8 117 aa3.83□□□□□ -1.8
SCN1A-218ENST00000640036 SDHAF1A6NFY7 115 aa3.83□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms