RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 TRAV8-3A0A0A6YYJ7 113 aa7.79□□□□□ -1.16
CLN3-257ENST00000637110 NKX2-5P52952 324 aaPredicted RBP7.79□□□□□ -1.16
CLN3-257ENST00000637110 CEBPGP53567 150 aa7.79□□□□□ -1.16
CLN3-257ENST00000637110 UBE2D3P61077 147 aa7.79□□□□□ -1.16
CLN3-257ENST00000637110 UBE2D2P62837 147 aa7.79□□□□□ -1.16
CLN3-257ENST00000637110 SERTAD4-AS1Q5TG53 156 aa7.79□□□□□ -1.16
CLN3-257ENST00000637110 CDPF1Q6NVV7 123 aa7.79□□□□□ -1.16
CLN3-257ENST00000637110 VPS13BQ7Z7G8 4022 aa7.78□□□□□ -1.16
CLN3-257ENST00000637110 C19orf71A6NCJ1 209 aa7.78□□□□□ -1.16
CLN3-257ENST00000637110 FAM229AH3BQW9 127 aa7.78□□□□□ -1.16
CLN3-257ENST00000637110 CACNG7P62955 275 aa7.78□□□□□ -1.16
CLN3-257ENST00000637110 LAGE3Q14657 143 aa7.78□□□□□ -1.16
CLN3-257ENST00000637110 NEXN-AS1Q8NBZ9 246 aa7.78□□□□□ -1.16
CLN3-257ENST00000637110 TRBV20OR9-2A0A075B6H5 130 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 IGLV5-52A0A0A0MRZ9 124 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 F2Z2F3 143 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 IGLC6P0CF74 106 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 XGP55808 180 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 NIT1Q86X76 327 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 NUDT10Q8NFP7 164 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 OR10G8Q8NGN5 311 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 RMI2Q96E14 147 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 NUDT11Q96G61 164 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 KLK12Q9UKR0 248 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 FAT1Q14517 4588 aa7.77□□□□□ -1.17
CLN3-257ENST00000637110 GCSHP23434 173 aa7.76□□□□□ -1.17
CLN3-257ENST00000637110 ELOBQ15370 118 aa7.76□□□□□ -1.17
CLN3-257ENST00000637110 LYZL1Q6UWQ5 148 aa7.76□□□□□ -1.17
CLN3-257ENST00000637110 OCC1Q8TAD7 63 aa7.76□□□□□ -1.17
CLN3-257ENST00000637110 UBE2WQ96B02 151 aa7.76□□□□□ -1.17
CLN3-257ENST00000637110 CHCHD5Q9BSY4 110 aa7.76□□□□□ -1.17
CLN3-257ENST00000637110 EIF5A2Q9GZV4 153 aaKnown RBP7.76□□□□□ -1.17
CLN3-257ENST00000637110 RNASE7Q9H1E1 156 aaKnown RBP7.76□□□□□ -1.17
CLN3-257ENST00000637110 IGKV2D-24A0A075B6R9 120 aa7.75□□□□□ -1.17
CLN3-257ENST00000637110 TRBV6-8A0A0A6YYG3 113 aa7.75□□□□□ -1.17
CLN3-257ENST00000637110 A0A1B0GVG6 124 aa7.75□□□□□ -1.17
CLN3-257ENST00000637110 LRCOL1A6NCL2 159 aa7.75□□□□□ -1.17
CLN3-257ENST00000637110 H7C1H1 209 aa7.75□□□□□ -1.17
CLN3-257ENST00000637110 TRGC1P0CF51 173 aa7.75□□□□□ -1.17
CLN3-257ENST00000637110 TWIST1Q15672 202 aa7.75□□□□□ -1.17
CLN3-257ENST00000637110 Q8N814 137 aa7.75□□□□□ -1.17
CLN3-257ENST00000637110 RPP21Q9H633 154 aaKnown RBP7.75□□□□□ -1.17
CLN3-257ENST00000637110 TMEM250H0YL14 139 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 LECT2O14960 151 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 CRPP02741 224 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 NTF3P20783 257 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 TMEM97Q5BJF2 176 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 SUMO4Q6EEV6 95 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 CHCHD7Q9BUK0 85 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 DPH3P1Q9H4G8 78 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 COX11Q9Y6N1 276 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 KIF25-AS1Q9Y6Z4 181 aa7.74□□□□□ -1.17
CLN3-257ENST00000637110 K7EN84 100 aa7.73□□□□□ -1.17
CLN3-257ENST00000637110 GATCO43716 136 aaKnown RBP7.73□□□□□ -1.17
CLN3-257ENST00000637110 ANGP03950 147 aaKnown RBP7.73□□□□□ -1.17
CLN3-257ENST00000637110 KRTAP10-1P60331 282 aa7.73□□□□□ -1.17
CLN3-257ENST00000637110 PKIAP61925 76 aa7.73□□□□□ -1.17
CLN3-257ENST00000637110 C15orf54Q8N8G6 183 aa7.73□□□□□ -1.17
CLN3-257ENST00000637110 NTN5Q8WTR8 489 aaPredicted RBP7.73□□□□□ -1.17
CLN3-257ENST00000637110 BAALCQ8WXS3 180 aa7.73□□□□□ -1.17
CLN3-257ENST00000637110 DNAJC30Q96LL9 226 aa7.73□□□□□ -1.17
CLN3-257ENST00000637110 TRBV25-1A0A075B6N4 114 aa7.72□□□□□ -1.17
CLN3-257ENST00000637110 M0QY20 66 aa7.72□□□□□ -1.17
CLN3-257ENST00000637110 SMR3BP02814 79 aaPredicted RBP7.72□□□□□ -1.17
CLN3-257ENST00000637110 RASL11AQ6T310 242 aa7.72□□□□□ -1.17
CLN3-257ENST00000637110 SMIM15Q7Z3B0 74 aa7.72□□□□□ -1.17
CLN3-257ENST00000637110 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.71□□□□□ -1.18
CLN3-257ENST00000637110 ZNF727A8MUV8 499 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 Q0VG73 95 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 GAGE6Q13070 117 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 MPV17L2Q567V2 206 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 WDR73Q6P4I2 378 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 LYPD6BQ8NI32 183 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 BORCS7Q96B45 105 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 SMIM7Q9BQ49 75 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 C1orf43Q9BWL3 253 aa7.71□□□□□ -1.18
CLN3-257ENST00000637110 IGHV1-24A0A0C4DH33 117 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 KRTAP29-1A8MX34 341 aaPredicted RBP7.7□□□□□ -1.18
CLN3-257ENST00000637110 CTRLP40313 264 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 WFDC2Q14508 124 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 ATRAIDQ6UW56 229 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 NTM-AS1Q6ZSK4 140 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 Q8N976 141 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 DEFB104AQ8WTQ1 72 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 PGLYRP4Q96LB8 373 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 PLA2G2DQ9UNK4 145 aa7.7□□□□□ -1.18
CLN3-257ENST00000637110 HMCN2Q8NDA2 5059 aa7.69□□□□□ -1.18
CLN3-257ENST00000637110 A8MWL6 223 aa7.69□□□□□ -1.18
CLN3-257ENST00000637110 FAM210AQ96ND0 272 aa7.69□□□□□ -1.18
CLN3-257ENST00000637110 NIT2Q9NQR4 276 aa7.69□□□□□ -1.18
CLN3-257ENST00000637110 UBE2L6O14933 153 aa7.68□□□□□ -1.18
CLN3-257ENST00000637110 RBX1P62877 108 aa7.68□□□□□ -1.18
CLN3-257ENST00000637110 CLPSL2Q6UWE3 100 aa7.68□□□□□ -1.18
CLN3-257ENST00000637110 ENHOQ6UWT2 76 aa7.68□□□□□ -1.18
CLN3-257ENST00000637110 FAM231DQ6ZW35 169 aa7.68□□□□□ -1.18
CLN3-257ENST00000637110 GTSF1Q8WW33 167 aa7.68□□□□□ -1.18
CLN3-257ENST00000637110 TRAV26-2A0A0B4J265 109 aa7.67□□□□□ -1.18
CLN3-257ENST00000637110 HLA-DQA1P01909 254 aa7.67□□□□□ -1.18
CLN3-257ENST00000637110 SRP19P09132 144 aaKnown RBP7.67□□□□□ -1.18
CLN3-257ENST00000637110 AMTP48728 403 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms