RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 KRTAP10-1P60331 282 aa12.79□□□□□ -0.36
CDX1-202ENST00000616154 ATRAIDQ6UW56 229 aa12.79□□□□□ -0.36
CDX1-202ENST00000616154 ZFP2Q6ZN57 461 aa12.79□□□□□ -0.36
CDX1-202ENST00000616154 IMMP2LQ96T52 175 aa12.79□□□□□ -0.36
CDX1-202ENST00000616154 CNFNQ9BYD5 112 aa12.79□□□□□ -0.36
CDX1-202ENST00000616154 LOC100131303A0A0U1RQF7 123 aa12.78□□□□□ -0.36
CDX1-202ENST00000616154 RHOHQ15669 191 aa12.78□□□□□ -0.36
CDX1-202ENST00000616154 C10orf126Q8N4M7 172 aa12.78□□□□□ -0.36
CDX1-202ENST00000616154 FER1L6-AS1Q8NA97 138 aa12.78□□□□□ -0.36
CDX1-202ENST00000616154 A8MWV9 139 aa12.77□□□□□ -0.37
CDX1-202ENST00000616154 F2Z2F3 143 aa12.77□□□□□ -0.37
CDX1-202ENST00000616154 H3BVH4 76 aa12.77□□□□□ -0.37
CDX1-202ENST00000616154 INAFM2P0DMQ5 153 aa12.77□□□□□ -0.37
CDX1-202ENST00000616154 S100A4P26447 101 aaKnown RBP12.77□□□□□ -0.37
CDX1-202ENST00000616154 UFSP1Q6NVU6 142 aa12.77□□□□□ -0.37
CDX1-202ENST00000616154 WDR73Q6P4I2 378 aa12.77□□□□□ -0.37
CDX1-202ENST00000616154 HIGD1CA8MV81 97 aa12.76□□□□□ -0.37
CDX1-202ENST00000616154 CRYGDP07320 174 aa12.76□□□□□ -0.37
CDX1-202ENST00000616154 Q5VSD8 79 aa12.76□□□□□ -0.37
CDX1-202ENST00000616154 PRADC1Q9BSG0 188 aa12.76□□□□□ -0.37
CDX1-202ENST00000616154 RPS10P5Q9NQ39 176 aa12.76□□□□□ -0.37
CDX1-202ENST00000616154 NUP35Q8NFH5 326 aa12.75□□□□□ -0.37
CDX1-202ENST00000616154 NAT8BQ9UHF3 227 aa12.75□□□□□ -0.37
CDX1-202ENST00000616154 LINC00694P0DN24 101 aa12.74□□□□□ -0.37
CDX1-202ENST00000616154 GCSHP23434 173 aa12.74□□□□□ -0.37
CDX1-202ENST00000616154 LYZL1Q6UWQ5 148 aa12.74□□□□□ -0.37
CDX1-202ENST00000616154 OR10AG1Q8NH19 301 aa12.74□□□□□ -0.37
CDX1-202ENST00000616154 FRZBQ92765 325 aa12.74□□□□□ -0.37
CDX1-202ENST00000616154 TRAV9-1A0A075B6T8 112 aa12.72□□□□□ -0.37
CDX1-202ENST00000616154 CACNG7P62955 275 aa12.72□□□□□ -0.37
CDX1-202ENST00000616154 DMRTA1Q5VZB9 504 aa12.72□□□□□ -0.37
CDX1-202ENST00000616154 Q6ZSN1 163 aa12.72□□□□□ -0.37
CDX1-202ENST00000616154 PHLDA3Q9Y5J5 127 aa12.72□□□□□ -0.37
CDX1-202ENST00000616154 MYCBP2O75592 4640 aa12.71□□□□□ -0.37
CDX1-202ENST00000616154 IGHV3-73A0A0B4J1V6 119 aa12.71□□□□□ -0.37
CDX1-202ENST00000616154 IGHV3-38A0A0C4DH36 116 aa12.71□□□□□ -0.37
CDX1-202ENST00000616154 RHODO00212 210 aa12.71□□□□□ -0.37
CDX1-202ENST00000616154 LINC01556Q5JQF7 62 aa12.71□□□□□ -0.37
CDX1-202ENST00000616154 ZFP82Q8N141 532 aa12.71□□□□□ -0.37
CDX1-202ENST00000616154 SYT8Q8NBV8 401 aa12.71□□□□□ -0.37
CDX1-202ENST00000616154 PGLYRP4Q96LB8 373 aa12.71□□□□□ -0.37
CDX1-202ENST00000616154 A0A1B0GUT8 65 aa12.7□□□□□ -0.38
CDX1-202ENST00000616154 LRCOL1A6NCL2 159 aa12.7□□□□□ -0.38
CDX1-202ENST00000616154 YPEL4Q96NS1 127 aa12.7□□□□□ -0.38
CDX1-202ENST00000616154 SAMD10Q9BYL1 202 aa12.7□□□□□ -0.38
CDX1-202ENST00000616154 JPT2Q9H910 190 aa12.7□□□□□ -0.38
CDX1-202ENST00000616154 SRRM2Q9UQ35 2752 aaKnown RBP12.7□□□□□ -0.38
CDX1-202ENST00000616154 FLG2Q5D862 2391 aaPredicted RBP12.7□□□□□ -0.38
CDX1-202ENST00000616154 A0A1B0GXF2 115 aa12.69□□□□□ -0.38
CDX1-202ENST00000616154 PSCAO43653 123 aa12.69□□□□□ -0.38
CDX1-202ENST00000616154 NTN5Q8WTR8 489 aaPredicted RBP12.69□□□□□ -0.38
CDX1-202ENST00000616154 TPPP3Q9BW30 176 aa12.69□□□□□ -0.38
CDX1-202ENST00000616154 IGLV5-52A0A0A0MRZ9 124 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 IBA57-AS1B1ANH7 110 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 NTF3P20783 257 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 LELP1Q5T871 98 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 KCNIP4Q6PIL6 250 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 ATP5L2Q7Z4Y8 100 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 BTF3L4Q96K17 158 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 GTSF1LQ9H1H1 148 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 DNAH8Q96JB1 4490 aa12.68□□□□□ -0.38
CDX1-202ENST00000616154 TRAV8-6A0A0B4J262 113 aa12.67□□□□□ -0.38
CDX1-202ENST00000616154 M0R381 172 aa12.67□□□□□ -0.38
CDX1-202ENST00000616154 SMR3BP02814 79 aaPredicted RBP12.67□□□□□ -0.38
CDX1-202ENST00000616154 SPANXN1Q5VSR9 72 aa12.67□□□□□ -0.38
CDX1-202ENST00000616154 GATD1Q8NB37 220 aa12.67□□□□□ -0.38
CDX1-202ENST00000616154 ATP6V0E2Q8NHE4 81 aa12.67□□□□□ -0.38
CDX1-202ENST00000616154 TMEM70Q9BUB7 260 aa12.67□□□□□ -0.38
CDX1-202ENST00000616154 SMCO4Q9NRQ5 59 aa12.67□□□□□ -0.38
CDX1-202ENST00000616154 TRBV24-1A0A075B6N3 115 aa12.66□□□□□ -0.38
CDX1-202ENST00000616154 MUC21A0A0G2JKD1 596 aa12.66□□□□□ -0.38
CDX1-202ENST00000616154 MUC21A0A140T8X8 626 aa12.66□□□□□ -0.38
CDX1-202ENST00000616154 A0A1B0GW15 77 aa12.66□□□□□ -0.38
CDX1-202ENST00000616154 S100PP25815 95 aa12.66□□□□□ -0.38
CDX1-202ENST00000616154 RIGQ13278 110 aa12.66□□□□□ -0.38
CDX1-202ENST00000616154 ELOBQ15370 118 aa12.66□□□□□ -0.38
CDX1-202ENST00000616154 OR10J3Q5JRS4 329 aa12.66□□□□□ -0.38
CDX1-202ENST00000616154 CBLN2Q8IUK8 224 aa12.65□□□□□ -0.38
CDX1-202ENST00000616154 Q8N814 137 aa12.65□□□□□ -0.38
CDX1-202ENST00000616154 BORCS7Q96B45 105 aa12.65□□□□□ -0.38
CDX1-202ENST00000616154 Q9UF83 564 aa12.65□□□□□ -0.38
CDX1-202ENST00000616154 KIF25-AS1Q9Y6Z4 181 aa12.65□□□□□ -0.38
CDX1-202ENST00000616154 URGCP-MRPS24S4R325 110 aa12.65□□□□□ -0.38
CDX1-202ENST00000616154 RASL11AQ6T310 242 aa12.64□□□□□ -0.39
CDX1-202ENST00000616154 C14orf178Q8N769 122 aaPredicted RBP12.64□□□□□ -0.39
CDX1-202ENST00000616154 Q9HAA7 133 aa12.64□□□□□ -0.39
CDX1-202ENST00000616154 TRBV10-1A0A0K0K1A3 114 aa12.63□□□□□ -0.39
CDX1-202ENST00000616154 FAM229AH3BQW9 127 aa12.63□□□□□ -0.39
CDX1-202ENST00000616154 TRGC1P0CF51 173 aa12.63□□□□□ -0.39
CDX1-202ENST00000616154 HAMPP81172 84 aa12.63□□□□□ -0.39
CDX1-202ENST00000616154 TWIST1Q15672 202 aa12.63□□□□□ -0.39
CDX1-202ENST00000616154 AP1S3Q96PC3 154 aa12.63□□□□□ -0.39
CDX1-202ENST00000616154 GAGE12JA6NER3 117 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 HBBP68871 147 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 GAGE1Q13065 139 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 GAGE4Q13068 117 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 GAGE5Q13069 117 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 LAGE3Q14657 143 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 GAGE13Q4V321 117 aa12.62□□□□□ -0.39
CDX1-202ENST00000616154 MRPL54Q6P161 138 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms