RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 TMEM256-PLSCR3K7ERE1 68 aa15.56■□□□□ 0.08
UPF1-207ENST00000599848 CRYBA4P53673 196 aa15.56■□□□□ 0.08
UPF1-207ENST00000599848 LOC105371267A0A1B0GV96 52 aa15.56■□□□□ 0.08
UPF1-207ENST00000599848 C20orf203Q8NBC4 194 aa15.55■□□□□ 0.08
UPF1-207ENST00000599848 H0Y9J4 135 aa15.55■□□□□ 0.08
UPF1-207ENST00000599848 PSMG3-AS1Q96PY0 264 aa15.54■□□□□ 0.08
UPF1-207ENST00000599848 K7EN84 100 aa15.54■□□□□ 0.08
UPF1-207ENST00000599848 UNQ9165/PRO28630Q6UXU0 137 aa15.54■□□□□ 0.08
UPF1-207ENST00000599848 NTN5Q8WTR8 489 aaPredicted RBP15.53■□□□□ 0.08
UPF1-207ENST00000599848 HIGD2AQ9BW72 106 aa15.53■□□□□ 0.08
UPF1-207ENST00000599848 ADCYAP1P18509 176 aa15.53■□□□□ 0.08
UPF1-207ENST00000599848 RBM3P98179 157 aaKnown RBP15.53■□□□□ 0.08
UPF1-207ENST00000599848 NUPR2A6NF83 97 aa15.53■□□□□ 0.08
UPF1-207ENST00000599848 LINC00474Q9P2X8 69 aa15.53■□□□□ 0.08
UPF1-207ENST00000599848 ZFAND2AQ8N6M9 145 aa15.53■□□□□ 0.08
UPF1-207ENST00000599848 NDUFA7O95182 113 aa15.52■□□□□ 0.08
UPF1-207ENST00000599848 PRAC2D3DTV9 90 aa15.52■□□□□ 0.08
UPF1-207ENST00000599848 EBI3Q14213 229 aa15.52■□□□□ 0.08
UPF1-207ENST00000599848 MIAQ16674 131 aa15.52■□□□□ 0.07
UPF1-207ENST00000599848 RSPO3Q9BXY4 272 aaPredicted RBP15.52■□□□□ 0.07
UPF1-207ENST00000599848 TECTAO75443 2155 aa15.51■□□□□ 0.07
UPF1-207ENST00000599848 ETDBQ3ZM63 59 aa15.51■□□□□ 0.07
UPF1-207ENST00000599848 MBD6Q96DN6 1003 aa15.51■□□□□ 0.07
UPF1-207ENST00000599848 GATA1P15976 413 aaPredicted RBP15.51■□□□□ 0.07
UPF1-207ENST00000599848 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.51■□□□□ 0.07
UPF1-207ENST00000599848 PTPRDP23468 1912 aa15.51■□□□□ 0.07
UPF1-207ENST00000599848 NLRC5Q86WI3 1866 aa15.51■□□□□ 0.07
UPF1-207ENST00000599848 TRBV6-4A0A1B0GX49 114 aa15.5■□□□□ 0.07
UPF1-207ENST00000599848 FAM19A1Q7Z5A9 133 aa15.5■□□□□ 0.07
UPF1-207ENST00000599848 MUSTN1Q8IVN3 82 aa15.5■□□□□ 0.07
UPF1-207ENST00000599848 SS18L2Q9UHA2 77 aa15.5■□□□□ 0.07
UPF1-207ENST00000599848 A0A0B4J2C4 111 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 CCDC140Q96MF4 163 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 NACAE9PAV3 2078 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 RS1O15537 224 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 MIR7-3HGQ8N6C7 128 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 FAM167A-AS1Q96KT0 104 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 PLXND1Q9Y4D7 1925 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 LRCOL1A6NCL2 159 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 LINC00269Q8N2A0 174 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 NCKAP5O14513 1909 aa15.49■□□□□ 0.07
UPF1-207ENST00000599848 TRBV12-3P01733 135 aa15.48■□□□□ 0.07
UPF1-207ENST00000599848 CHCHD10Q8WYQ3 142 aaPredicted RBP15.48■□□□□ 0.07
UPF1-207ENST00000599848 CASC2Q6XLA1 102 aa15.48■□□□□ 0.07
UPF1-207ENST00000599848 Q6ZTI0 123 aa15.48■□□□□ 0.07
UPF1-207ENST00000599848 EML6Q6ZMW3 1958 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 C11orf71Q6IPW1 123 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 LYPD6Q86Y78 171 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 WFDC9Q8NEX5 89 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 MDFICQ9P1T7 246 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 C14orf132Q9NPU4 83 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 LY6G6CO95867 125 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 SYCNQ0VAF6 134 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 UPK3BQ9BT76 320 aa15.47■□□□□ 0.07
UPF1-207ENST00000599848 E9PLD3 99 aa15.46■□□□□ 0.07
UPF1-207ENST00000599848 TDRG1Q3Y452 100 aa15.46■□□□□ 0.07
UPF1-207ENST00000599848 WIPF3A6NGB9 483 aa15.46■□□□□ 0.07
UPF1-207ENST00000599848 BAALCQ8WXS3 180 aa15.46■□□□□ 0.07
UPF1-207ENST00000599848 DOCK9Q9BZ29 2069 aa15.46■□□□□ 0.06
UPF1-207ENST00000599848 C10orf91Q5T1B1 145 aa15.45■□□□□ 0.06
UPF1-207ENST00000599848 PSMB8P28062 276 aa15.45■□□□□ 0.06
UPF1-207ENST00000599848 LINC01006Q8NI28 216 aa15.45■□□□□ 0.06
UPF1-207ENST00000599848 TTC28Q96AY4 2481 aa15.45■□□□□ 0.06
UPF1-207ENST00000599848 LECT2O14960 151 aa15.45■□□□□ 0.06
UPF1-207ENST00000599848 MSRB1Q9NZV6 116 aa15.44■□□□□ 0.06
UPF1-207ENST00000599848 MED13Q9UHV7 2174 aa15.44■□□□□ 0.06
UPF1-207ENST00000599848 TRBV10-2A0A0K0K1G8 114 aa15.44■□□□□ 0.06
UPF1-207ENST00000599848 HIGD1BQ9P298 99 aa15.44■□□□□ 0.06
UPF1-207ENST00000599848 K7EP13 123 aa15.43■□□□□ 0.06
UPF1-207ENST00000599848 FSHBP01225 129 aa15.43■□□□□ 0.06
UPF1-207ENST00000599848 RPL39P62891 51 aaKnown RBP15.43■□□□□ 0.06
UPF1-207ENST00000599848 UBE2D4Q9Y2X8 147 aa15.43■□□□□ 0.06
UPF1-207ENST00000599848 ANAPC1Q9H1A4 1944 aa15.42■□□□□ 0.06
UPF1-207ENST00000599848 MED13LQ71F56 2210 aa15.42■□□□□ 0.06
UPF1-207ENST00000599848 Q8N976 141 aa15.42■□□□□ 0.06
UPF1-207ENST00000599848 BDP1A6H8Y1 2624 aa15.42■□□□□ 0.06
UPF1-207ENST00000599848 OTOGLQ3ZCN5 2332 aa15.42■□□□□ 0.06
UPF1-207ENST00000599848 LYPD6BQ8NI32 183 aa15.41■□□□□ 0.06
UPF1-207ENST00000599848 CUL9Q8IWT3 2517 aa15.41■□□□□ 0.06
UPF1-207ENST00000599848 HEATR5AQ86XA9 2040 aa15.41■□□□□ 0.06
UPF1-207ENST00000599848 H3BT86 120 aa15.41■□□□□ 0.06
UPF1-207ENST00000599848 ATOX1O00244 68 aa15.41■□□□□ 0.06
UPF1-207ENST00000599848 H3BMG7 143 aa15.41■□□□□ 0.06
UPF1-207ENST00000599848 IGKV4-1P06312 121 aa15.41■□□□□ 0.06
UPF1-207ENST00000599848 MSMPQ1L6U9 139 aa15.41■□□□□ 0.06
UPF1-207ENST00000599848 K7ERS5 55 aa15.4■□□□□ 0.06
UPF1-207ENST00000599848 FAM110AQ9BQ89 295 aa15.4■□□□□ 0.06
UPF1-207ENST00000599848 NPSP0C0P6 89 aa15.39■□□□□ 0.05
UPF1-207ENST00000599848 ZNF702PQ9H963 129 aa15.39■□□□□ 0.05
UPF1-207ENST00000599848 MUC7Q8TAX7 377 aa15.39■□□□□ 0.05
UPF1-207ENST00000599848 LELP1Q5T871 98 aa15.38■□□□□ 0.05
UPF1-207ENST00000599848 TRBV6-8A0A0A6YYG3 113 aa15.38■□□□□ 0.05
UPF1-207ENST00000599848 ODF1Q14990 250 aa15.38■□□□□ 0.05
UPF1-207ENST00000599848 TMEM131Q92545 1883 aa15.38■□□□□ 0.05
UPF1-207ENST00000599848 IBA57-AS1B1ANH7 110 aa15.38■□□□□ 0.05
UPF1-207ENST00000599848 K7ERJ3 54 aa15.38■□□□□ 0.05
UPF1-207ENST00000599848 LOC107984640A0A0U1RRK4 108 aa15.37■□□□□ 0.05
UPF1-207ENST00000599848 MAJINQ3KP22 176 aa15.37■□□□□ 0.05
UPF1-207ENST00000599848 C5orf47Q569G3 176 aa15.37■□□□□ 0.05
UPF1-207ENST00000599848 Q6ZUT4 128 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 71.6 ms