RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 NIT1Q86X76 327 aa10.1□□□□□ -0.79
TRIM28-205ENST00000595028 NUDT10Q8NFP7 164 aa10.1□□□□□ -0.79
TRIM28-205ENST00000595028 NUDT11Q96G61 164 aa10.1□□□□□ -0.79
TRIM28-205ENST00000595028 RPP21Q9H633 154 aaKnown RBP10.1□□□□□ -0.79
TRIM28-205ENST00000595028 DAZ3Q9NR90 486 aaKnown RBP10.1□□□□□ -0.79
TRIM28-205ENST00000595028 PGPEP1Q9NXJ5 209 aa10.1□□□□□ -0.79
TRIM28-205ENST00000595028 SRRM2Q9UQ35 2752 aaKnown RBP10.09□□□□□ -0.79
TRIM28-205ENST00000595028 F2Z2F3 143 aa10.09□□□□□ -0.79
TRIM28-205ENST00000595028 FUSP35637 526 aaKnown RBP eCLIP10.09□□□□□ -0.79
TRIM28-205ENST00000595028 OCC1Q8TAD7 63 aa10.09□□□□□ -0.79
TRIM28-205ENST00000595028 RNASE7Q9H1E1 156 aaKnown RBP10.09□□□□□ -0.79
TRIM28-205ENST00000595028 URGCP-MRPS24S4R325 110 aa10.09□□□□□ -0.79
TRIM28-205ENST00000595028 LRCOL1A6NCL2 159 aa10.08□□□□□ -0.8
TRIM28-205ENST00000595028 MGPP08493 103 aa10.08□□□□□ -0.8
TRIM28-205ENST00000595028 LYZL1Q6UWQ5 148 aa10.08□□□□□ -0.8
TRIM28-205ENST00000595028 CHCHD7Q9BUK0 85 aa10.08□□□□□ -0.8
TRIM28-205ENST00000595028 TRBV6-8A0A0A6YYG3 113 aa10.07□□□□□ -0.8
TRIM28-205ENST00000595028 TRAV8-3A0A0A6YYJ7 113 aa10.07□□□□□ -0.8
TRIM28-205ENST00000595028 NDUFS6O75380 124 aaKnown RBP10.07□□□□□ -0.8
TRIM28-205ENST00000595028 TRGC1P0CF51 173 aa10.07□□□□□ -0.8
TRIM28-205ENST00000595028 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.07□□□□□ -0.8
TRIM28-205ENST00000595028 FAM210AQ96ND0 272 aa10.07□□□□□ -0.8
TRIM28-205ENST00000595028 TM2D2Q9BX73 214 aa10.07□□□□□ -0.8
TRIM28-205ENST00000595028 CNFNQ9BYD5 112 aa10.07□□□□□ -0.8
TRIM28-205ENST00000595028 A0A087WX48 190 aa10.06□□□□□ -0.8
TRIM28-205ENST00000595028 H7C1H1 209 aa10.06□□□□□ -0.8
TRIM28-205ENST00000595028 M0QY20 66 aa10.06□□□□□ -0.8
TRIM28-205ENST00000595028 CEBPGP53567 150 aa10.06□□□□□ -0.8
TRIM28-205ENST00000595028 SUMO4Q6EEV6 95 aa10.06□□□□□ -0.8
TRIM28-205ENST00000595028 EIF5A2Q9GZV4 153 aaKnown RBP10.06□□□□□ -0.8
TRIM28-205ENST00000595028 FAT1Q14517 4588 aa10.06□□□□□ -0.8
TRIM28-205ENST00000595028 NTF3P20783 257 aa10.05□□□□□ -0.8
TRIM28-205ENST00000595028 WDR73Q6P4I2 378 aa10.05□□□□□ -0.8
TRIM28-205ENST00000595028 KCNIP4Q6PIL6 250 aa10.05□□□□□ -0.8
TRIM28-205ENST00000595028 FAM231DQ6ZW35 169 aa10.05□□□□□ -0.8
TRIM28-205ENST00000595028 SMIM7Q9BQ49 75 aa10.05□□□□□ -0.8
TRIM28-205ENST00000595028 DPH3P1Q9H4G8 78 aa10.05□□□□□ -0.8
TRIM28-205ENST00000595028 DNAH8Q96JB1 4490 aa10.05□□□□□ -0.8
TRIM28-205ENST00000595028 ELOBQ15370 118 aa10.04□□□□□ -0.8
TRIM28-205ENST00000595028 TMEM97Q5BJF2 176 aa10.04□□□□□ -0.8
TRIM28-205ENST00000595028 Q8N814 137 aa10.04□□□□□ -0.8
TRIM28-205ENST00000595028 NTN5Q8WTR8 489 aaPredicted RBP10.04□□□□□ -0.8
TRIM28-205ENST00000595028 GTSF1Q8WW33 167 aa10.04□□□□□ -0.8
TRIM28-205ENST00000595028 DNAJC30Q96LL9 226 aa10.04□□□□□ -0.8
TRIM28-205ENST00000595028 KLK12Q9UKR0 248 aa10.04□□□□□ -0.8
TRIM28-205ENST00000595028 GATCO43716 136 aaKnown RBP10.03□□□□□ -0.8
TRIM28-205ENST00000595028 TWIST1Q15672 202 aa10.03□□□□□ -0.8
TRIM28-205ENST00000595028 MPV17L2Q567V2 206 aa10.03□□□□□ -0.8
TRIM28-205ENST00000595028 TEX261Q6UWH6 196 aa10.03□□□□□ -0.8
TRIM28-205ENST00000595028 NTM-AS1Q6ZSK4 140 aa10.03□□□□□ -0.8
TRIM28-205ENST00000595028 RMI2Q96E14 147 aa10.03□□□□□ -0.8
TRIM28-205ENST00000595028 CHCHD5Q9BSY4 110 aa10.03□□□□□ -0.8
TRIM28-205ENST00000595028 VPS13BQ7Z7G8 4022 aa10.02□□□□□ -0.8
TRIM28-205ENST00000595028 IGLV5-52A0A0A0MRZ9 124 aa10.02□□□□□ -0.81
TRIM28-205ENST00000595028 SRP19P09132 144 aaKnown RBP10.02□□□□□ -0.81
TRIM28-205ENST00000595028 KRTAP10-1P60331 282 aa10.02□□□□□ -0.81
TRIM28-205ENST00000595028 PKIAP61925 76 aa10.02□□□□□ -0.81
TRIM28-205ENST00000595028 WFDC2Q14508 124 aa10.02□□□□□ -0.81
TRIM28-205ENST00000595028 CT83Q5H943 113 aa10.02□□□□□ -0.81
TRIM28-205ENST00000595028 RASL11AQ6T310 242 aa10.02□□□□□ -0.81
TRIM28-205ENST00000595028 UBE2WQ96B02 151 aa10.02□□□□□ -0.81
TRIM28-205ENST00000595028 COX11Q9Y6N1 276 aa10.02□□□□□ -0.81
TRIM28-205ENST00000595028 IGKV2D-24A0A075B6R9 120 aa10.01□□□□□ -0.81
TRIM28-205ENST00000595028 ZNF727A8MUV8 499 aa10.01□□□□□ -0.81
TRIM28-205ENST00000595028 TMEM262E9PQX1 116 aa10.01□□□□□ -0.81
TRIM28-205ENST00000595028 INAFM2P0DMQ5 153 aa10.01□□□□□ -0.81
TRIM28-205ENST00000595028 ATRAIDQ6UW56 229 aa10.01□□□□□ -0.81
TRIM28-205ENST00000595028 LINC01551Q86U37 167 aa10.01□□□□□ -0.81
TRIM28-205ENST00000595028 TRBV25-1A0A075B6N4 114 aa10□□□□□ -0.81
TRIM28-205ENST00000595028 A8MWL6 223 aa10□□□□□ -0.81
TRIM28-205ENST00000595028 EPM2AB3EWF7 344 aa10□□□□□ -0.81
TRIM28-205ENST00000595028 GCSHP23434 173 aa10□□□□□ -0.81
TRIM28-205ENST00000595028 IQCJQ1A5X6 159 aa10□□□□□ -0.81
TRIM28-205ENST00000595028 C15orf54Q8N8G6 183 aa10□□□□□ -0.81
TRIM28-205ENST00000595028 IGHV1-24A0A0C4DH33 117 aa9.99□□□□□ -0.81
TRIM28-205ENST00000595028 CRPP02741 224 aa9.99□□□□□ -0.81
TRIM28-205ENST00000595028 Q0VG73 95 aa9.99□□□□□ -0.81
TRIM28-205ENST00000595028 NIT2Q9NQR4 276 aa9.99□□□□□ -0.81
TRIM28-205ENST00000595028 LECT2O14960 151 aa9.98□□□□□ -0.81
TRIM28-205ENST00000595028 GAGE6Q13070 117 aa9.98□□□□□ -0.81
TRIM28-205ENST00000595028 SMIM15Q7Z3B0 74 aa9.98□□□□□ -0.81
TRIM28-205ENST00000595028 Q8N976 141 aa9.98□□□□□ -0.81
TRIM28-205ENST00000595028 FRZBQ92765 325 aa9.98□□□□□ -0.81
TRIM28-205ENST00000595028 PGLYRP4Q96LB8 373 aa9.98□□□□□ -0.81
TRIM28-205ENST00000595028 TRAV26-2A0A0B4J265 109 aa9.97□□□□□ -0.81
TRIM28-205ENST00000595028 ANGP03950 147 aaKnown RBP9.97□□□□□ -0.81
TRIM28-205ENST00000595028 FOXA3P55318 350 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-205ENST00000595028 RBX1P62877 108 aa9.97□□□□□ -0.81
TRIM28-205ENST00000595028 ENHOQ6UWT2 76 aa9.97□□□□□ -0.81
TRIM28-205ENST00000595028 BAALCQ8WXS3 180 aa9.97□□□□□ -0.81
TRIM28-205ENST00000595028 GFRA4Q9GZZ7 299 aa9.97□□□□□ -0.81
TRIM28-205ENST00000595028 OSTCQ9NRP0 149 aa9.97□□□□□ -0.81
TRIM28-205ENST00000595028 FLG2Q5D862 2391 aaPredicted RBP9.97□□□□□ -0.81
TRIM28-205ENST00000595028 XGP55808 180 aa9.96□□□□□ -0.82
TRIM28-205ENST00000595028 RAB14P61106 215 aa9.96□□□□□ -0.82
TRIM28-205ENST00000595028 FAM74A3Q4VXF1 159 aa9.96□□□□□ -0.82
TRIM28-205ENST00000595028 GATD1Q8NB37 220 aa9.96□□□□□ -0.82
TRIM28-205ENST00000595028 TSKUQ8WUA8 353 aa9.96□□□□□ -0.82
TRIM28-205ENST00000595028 BORCS7Q96B45 105 aa9.96□□□□□ -0.82
TRIM28-205ENST00000595028 C1orf43Q9BWL3 253 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms