RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 C15orf54Q8N8G6 183 aa9.85□□□□□ -0.83
VRK3-206ENST00000594090 TSKUQ8WUA8 353 aa9.85□□□□□ -0.83
VRK3-206ENST00000594090 TNFRSF18Q9Y5U5 241 aa9.85□□□□□ -0.83
VRK3-206ENST00000594090 BIRC6Q9NR09 4857 aa9.85□□□□□ -0.83
VRK3-206ENST00000594090 M0QY20 66 aa9.84□□□□□ -0.83
VRK3-206ENST00000594090 FOXA3P55318 350 aaPredicted RBP9.84□□□□□ -0.83
VRK3-206ENST00000594090 PGLYRP4Q96LB8 373 aa9.84□□□□□ -0.83
VRK3-206ENST00000594090 GFRA4Q9GZZ7 299 aa9.84□□□□□ -0.83
VRK3-206ENST00000594090 V9GYV3 84 aa9.84□□□□□ -0.83
VRK3-206ENST00000594090 HIGD1CA8MV81 97 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 H7C1H1 209 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 IGHV3-30P01768 117 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 IGHV3-33P01772 117 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 IGHV3-30-3P0DP02 117 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 IGHV3-30-5P0DP03 117 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 IFITM2Q01629 132 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 CLLU1Q5K131 121 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 NFE4Q86UQ8 179 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 Q8N3U1 123 aa9.83□□□□□ -0.84
VRK3-206ENST00000594090 FAM231BA6NCW3 169 aa9.82□□□□□ -0.84
VRK3-206ENST00000594090 IBA57-AS1B1ANH7 110 aa9.82□□□□□ -0.84
VRK3-206ENST00000594090 RASL11AQ6T310 242 aa9.82□□□□□ -0.84
VRK3-206ENST00000594090 SMIM15Q7Z3B0 74 aa9.82□□□□□ -0.84
VRK3-206ENST00000594090 DAZ4Q86SG3 579 aaKnown RBP9.82□□□□□ -0.84
VRK3-206ENST00000594090 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.82□□□□□ -0.84
VRK3-206ENST00000594090 BORCS7Q96B45 105 aa9.82□□□□□ -0.84
VRK3-206ENST00000594090 DNAJC30Q96LL9 226 aa9.82□□□□□ -0.84
VRK3-206ENST00000594090 DAZ3Q9NR90 486 aaKnown RBP9.82□□□□□ -0.84
VRK3-206ENST00000594090 TRBV6-8A0A0A6YYG3 113 aa9.81□□□□□ -0.84
VRK3-206ENST00000594090 A0A1B0GUT8 65 aa9.81□□□□□ -0.84
VRK3-206ENST00000594090 NIT1Q86X76 327 aa9.81□□□□□ -0.84
VRK3-206ENST00000594090 PKD1P98161 4303 aa9.8□□□□□ -0.84
VRK3-206ENST00000594090 PKHD1P08F94 4074 aa9.79□□□□□ -0.84
VRK3-206ENST00000594090 TRAV26-2A0A0B4J265 109 aa9.79□□□□□ -0.84
VRK3-206ENST00000594090 LAGE3Q14657 143 aa9.79□□□□□ -0.84
VRK3-206ENST00000594090 TMEM97Q5BJF2 176 aa9.79□□□□□ -0.84
VRK3-206ENST00000594090 GATD1Q8NB37 220 aa9.79□□□□□ -0.84
VRK3-206ENST00000594090 NUP35Q8NFH5 326 aa9.79□□□□□ -0.84
VRK3-206ENST00000594090 NIT2Q9NQR4 276 aa9.79□□□□□ -0.84
VRK3-206ENST00000594090 URGCP-MRPS24S4R325 110 aa9.79□□□□□ -0.84
VRK3-206ENST00000594090 NTM-AS1Q6ZSK4 140 aa9.78□□□□□ -0.84
VRK3-206ENST00000594090 CHCHD7Q9BUK0 85 aa9.78□□□□□ -0.84
VRK3-206ENST00000594090 Q9HAA7 133 aa9.78□□□□□ -0.84
VRK3-206ENST00000594090 NAT8BQ9UHF3 227 aa9.78□□□□□ -0.84
VRK3-206ENST00000594090 SMIM27A0A1W2PRY6 76 aa9.77□□□□□ -0.85
VRK3-206ENST00000594090 FRZBQ92765 325 aa9.77□□□□□ -0.85
VRK3-206ENST00000594090 A0A087WX48 190 aa9.76□□□□□ -0.85
VRK3-206ENST00000594090 RIGQ13278 110 aa9.76□□□□□ -0.85
VRK3-206ENST00000594090 TMEM191AQ9H0A3 160 aa9.76□□□□□ -0.85
VRK3-206ENST00000594090 TRBV25-1A0A075B6N4 114 aa9.75□□□□□ -0.85
VRK3-206ENST00000594090 KCNIP4Q6PIL6 250 aa9.75□□□□□ -0.85
VRK3-206ENST00000594090 RPL39LQ96EH5 51 aaKnown RBP9.75□□□□□ -0.85
VRK3-206ENST00000594090 CHCHD5Q9BSY4 110 aa9.75□□□□□ -0.85
VRK3-206ENST00000594090 DNAH11Q96DT5 4516 aa9.75□□□□□ -0.85
VRK3-206ENST00000594090 IGHV1-24A0A0C4DH33 117 aa9.74□□□□□ -0.85
VRK3-206ENST00000594090 TMEM262E9PQX1 116 aa9.74□□□□□ -0.85
VRK3-206ENST00000594090 PNRC1Q12796 327 aaPredicted RBP9.74□□□□□ -0.85
VRK3-206ENST00000594090 IQCJQ1A5X6 159 aa9.74□□□□□ -0.85
VRK3-206ENST00000594090 MPV17L2Q567V2 206 aa9.74□□□□□ -0.85
VRK3-206ENST00000594090 SPATA12Q7Z6I5 190 aa9.74□□□□□ -0.85
VRK3-206ENST00000594090 DYNC1H1Q14204 4646 aaKnown RBP9.74□□□□□ -0.85
VRK3-206ENST00000594090 A0A087WTM6 91 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 TRAV8-3A0A0A6YYJ7 113 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 PSCAO43653 123 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 KRTAP10-2P60368 255 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 PKIAP61925 76 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 ELOBQ15370 118 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 RNF185Q96GF1 192 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 KLK12Q9UKR0 248 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 C16orf90A8MZG2 172 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 EREGO14944 169 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 RAB4AP20338 218 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 UQCC3Q6UW78 93 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 AMN1Q8IY45 258 aa9.73□□□□□ -0.85
VRK3-206ENST00000594090 GAGE6Q13070 117 aa9.72□□□□□ -0.85
VRK3-206ENST00000594090 COTL1Q14019 142 aa9.72□□□□□ -0.85
VRK3-206ENST00000594090 ATRAIDQ6UW56 229 aa9.72□□□□□ -0.85
VRK3-206ENST00000594090 DEFB104AQ8WTQ1 72 aa9.72□□□□□ -0.85
VRK3-206ENST00000594090 UBE2WQ96B02 151 aa9.72□□□□□ -0.85
VRK3-206ENST00000594090 MRAP2Q96G30 205 aa9.72□□□□□ -0.85
VRK3-206ENST00000594090 TMEM243Q9BU79 118 aa9.72□□□□□ -0.85
VRK3-206ENST00000594090 TM2D2Q9BX73 214 aa9.72□□□□□ -0.85
VRK3-206ENST00000594090 PPP1R2P9O14990 202 aa9.71□□□□□ -0.86
VRK3-206ENST00000594090 GAS8-AS1O95177 125 aa9.71□□□□□ -0.86
VRK3-206ENST00000594090 Q8N976 141 aa9.71□□□□□ -0.86
VRK3-206ENST00000594090 TRBV6-5A0A0K0K1A5 114 aa9.7□□□□□ -0.86
VRK3-206ENST00000594090 LRCOL1A6NCL2 159 aa9.7□□□□□ -0.86
VRK3-206ENST00000594090 SDHAF1A6NFY7 115 aa9.7□□□□□ -0.86
VRK3-206ENST00000594090 ANGP03950 147 aaKnown RBP9.7□□□□□ -0.86
VRK3-206ENST00000594090 ADCYAP1P18509 176 aa9.7□□□□□ -0.86
VRK3-206ENST00000594090 RBX1P62877 108 aa9.7□□□□□ -0.86
VRK3-206ENST00000594090 A0A1B0GW15 77 aa9.69□□□□□ -0.86
VRK3-206ENST00000594090 RPS10P46783 165 aaKnown RBP9.69□□□□□ -0.86
VRK3-206ENST00000594090 AMTP48728 403 aa9.69□□□□□ -0.86
VRK3-206ENST00000594090 CAMPP49913 170 aa9.69□□□□□ -0.86
VRK3-206ENST00000594090 Q0VG73 95 aa9.69□□□□□ -0.86
VRK3-206ENST00000594090 MRPL54Q6P161 138 aaKnown RBP9.69□□□□□ -0.86
VRK3-206ENST00000594090 ANAPC16Q96DE5 110 aa9.69□□□□□ -0.86
VRK3-206ENST00000594090 RMI2Q96E14 147 aa9.69□□□□□ -0.86
VRK3-206ENST00000594090 A0A1B0GXF2 115 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms