RNA–Protein interactions for RNA: ENST00000593706.3

PNKP-202, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 849 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-202ENST00000593706 FAT3Q8TDW7 4589 aa9.7□□□□□ -0.86
PNKP-202ENST00000593706 IGKV2D-24A0A075B6R9 120 aa9.7□□□□□ -0.86
PNKP-202ENST00000593706 RAB19A4D1S5 217 aa9.7□□□□□ -0.86
PNKP-202ENST00000593706 HMCN2Q8NDA2 5059 aa9.7□□□□□ -0.86
PNKP-202ENST00000593706 IGLC6P0CF74 106 aa9.69□□□□□ -0.86
PNKP-202ENST00000593706 Q8N976 141 aa9.69□□□□□ -0.86
PNKP-202ENST00000593706 VAX2Q9UIW0 290 aa9.69□□□□□ -0.86
PNKP-202ENST00000593706 TRBV10-1A0A0K0K1A3 114 aa9.68□□□□□ -0.86
PNKP-202ENST00000593706 IFNA1P01562 189 aa9.68□□□□□ -0.86
PNKP-202ENST00000593706 GNG4P50150 75 aa9.68□□□□□ -0.86
PNKP-202ENST00000593706 ALKAL2Q6UX46 152 aa9.68□□□□□ -0.86
PNKP-202ENST00000593706 OR10G8Q8NGN5 311 aa9.68□□□□□ -0.86
PNKP-202ENST00000593706 LYPD6BQ8NI32 183 aa9.68□□□□□ -0.86
PNKP-202ENST00000593706 KIF25-AS1Q9Y6Z4 181 aa9.68□□□□□ -0.86
PNKP-202ENST00000593706 UBR4Q5T4S7 5183 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 PKHD1L1Q86WI1 4243 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 A0A087WX48 190 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 MUC21A0A0G2JKD1 596 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 MUC21A0A140T8X8 626 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 TAGLN2P37802 199 aaKnown RBP9.67□□□□□ -0.86
PNKP-202ENST00000593706 UBE2D3P61077 147 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 UBE2D2P62837 147 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 KCNIP4Q6PIL6 250 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 CHAC1Q9BUX1 264 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 KLK12Q9UKR0 248 aa9.67□□□□□ -0.86
PNKP-202ENST00000593706 RAB4BP61018 213 aa9.66□□□□□ -0.86
PNKP-202ENST00000593706 SERTAD4-AS1Q5TG53 156 aa9.66□□□□□ -0.86
PNKP-202ENST00000593706 NIT1Q86X76 327 aa9.66□□□□□ -0.86
PNKP-202ENST00000593706 UBE2WQ96B02 151 aa9.66□□□□□ -0.86
PNKP-202ENST00000593706 DNAJC30Q96LL9 226 aa9.66□□□□□ -0.86
PNKP-202ENST00000593706 MED9Q9NWA0 146 aa9.66□□□□□ -0.86
PNKP-202ENST00000593706 TRBV7-3A0A075B6L6 115 aa9.65□□□□□ -0.86
PNKP-202ENST00000593706 GZMBP10144 247 aa9.65□□□□□ -0.86
PNKP-202ENST00000593706 OR2D3Q8NGH3 330 aa9.65□□□□□ -0.86
PNKP-202ENST00000593706 ELOBQ15370 118 aa9.64□□□□□ -0.87
PNKP-202ENST00000593706 SPANXN1Q5VSR9 72 aa9.64□□□□□ -0.87
PNKP-202ENST00000593706 NEXN-AS1Q8NBZ9 246 aa9.64□□□□□ -0.87
PNKP-202ENST00000593706 K7EN84 100 aa9.63□□□□□ -0.87
PNKP-202ENST00000593706 RPS20P60866 119 aaKnown RBP9.63□□□□□ -0.87
PNKP-202ENST00000593706 RPL36AP83881 106 aaKnown RBP9.63□□□□□ -0.87
PNKP-202ENST00000593706 ZNF56Q15929 161 aa9.63□□□□□ -0.87
PNKP-202ENST00000593706 FER1L6-AS1Q8NA97 138 aa9.63□□□□□ -0.87
PNKP-202ENST00000593706 CIRBP-AS1Q8TBR5 109 aa9.63□□□□□ -0.87
PNKP-202ENST00000593706 RPL36ALQ969Q0 106 aaKnown RBP9.63□□□□□ -0.87
PNKP-202ENST00000593706 AP1S3Q96PC3 154 aa9.63□□□□□ -0.87
PNKP-202ENST00000593706 CHCHD7Q9BUK0 85 aa9.63□□□□□ -0.87
PNKP-202ENST00000593706 TMEM250H0YL14 139 aa9.62□□□□□ -0.87
PNKP-202ENST00000593706 P01737 135 aa9.62□□□□□ -0.87
PNKP-202ENST00000593706 CTRLP40313 264 aa9.62□□□□□ -0.87
PNKP-202ENST00000593706 BLOC1S1P78537 153 aa9.62□□□□□ -0.87
PNKP-202ENST00000593706 Q0VG73 95 aa9.62□□□□□ -0.87
PNKP-202ENST00000593706 C14orf177Q52M58 125 aa9.62□□□□□ -0.87
PNKP-202ENST00000593706 C1orf43Q9BWL3 253 aa9.62□□□□□ -0.87
PNKP-202ENST00000593706 OXTP01178 125 aa9.61□□□□□ -0.87
PNKP-202ENST00000593706 CRPP02741 224 aa9.61□□□□□ -0.87
PNKP-202ENST00000593706 NUDT10Q8NFP7 164 aa9.61□□□□□ -0.87
PNKP-202ENST00000593706 DAZAP1Q96EP5 407 aaKnown RBP9.61□□□□□ -0.87
PNKP-202ENST00000593706 NUDT11Q96G61 164 aa9.61□□□□□ -0.87
PNKP-202ENST00000593706 CNFNQ9BYD5 112 aa9.61□□□□□ -0.87
PNKP-202ENST00000593706 TRBV6-8A0A0A6YYG3 113 aa9.6□□□□□ -0.87
PNKP-202ENST00000593706 TMEM262E9PQX1 116 aa9.6□□□□□ -0.87
PNKP-202ENST00000593706 KRTAP10-4P60372 401 aaPredicted RBP9.6□□□□□ -0.87
PNKP-202ENST00000593706 OCC1Q8TAD7 63 aa9.6□□□□□ -0.87
PNKP-202ENST00000593706 TPPP3Q9BW30 176 aa9.6□□□□□ -0.87
PNKP-202ENST00000593706 BIN3Q9NQY0 253 aa9.6□□□□□ -0.87
PNKP-202ENST00000593706 XKRY2A2RUG3 117 aa9.59□□□□□ -0.87
PNKP-202ENST00000593706 F2Z2F3 143 aa9.59□□□□□ -0.87
PNKP-202ENST00000593706 M0QY20 66 aa9.59□□□□□ -0.87
PNKP-202ENST00000593706 SSTP61278 116 aa9.59□□□□□ -0.87
PNKP-202ENST00000593706 CACNG7P62955 275 aa9.59□□□□□ -0.87
PNKP-202ENST00000593706 ATRAIDQ6UW56 229 aa9.59□□□□□ -0.87
PNKP-202ENST00000593706 LYZL1Q6UWQ5 148 aa9.59□□□□□ -0.87
PNKP-202ENST00000593706 RNASE7Q9H1E1 156 aaKnown RBP9.59□□□□□ -0.87
PNKP-202ENST00000593706 RPP21Q9H633 154 aaKnown RBP9.59□□□□□ -0.87
PNKP-202ENST00000593706 PLA2G2DQ9UNK4 145 aa9.59□□□□□ -0.87
PNKP-202ENST00000593706 NDUFS6O75380 124 aaKnown RBP9.58□□□□□ -0.88
PNKP-202ENST00000593706 HLA-DQA1P01909 254 aa9.58□□□□□ -0.88
PNKP-202ENST00000593706 RPL37AP61513 92 aaKnown RBP9.58□□□□□ -0.88
PNKP-202ENST00000593706 NTM-AS1Q6ZSK4 140 aa9.58□□□□□ -0.88
PNKP-202ENST00000593706 C15orf54Q8N8G6 183 aa9.58□□□□□ -0.88
PNKP-202ENST00000593706 F5H697 171 aa9.57□□□□□ -0.88
PNKP-202ENST00000593706 SMIM17P0DL12 118 aa9.57□□□□□ -0.88
PNKP-202ENST00000593706 SUMO4Q6EEV6 95 aa9.57□□□□□ -0.88
PNKP-202ENST00000593706 WDR73Q6P4I2 378 aa9.57□□□□□ -0.88
PNKP-202ENST00000593706 GTSF1Q8WW33 167 aa9.57□□□□□ -0.88
PNKP-202ENST00000593706 ANGP03950 147 aaKnown RBP9.56□□□□□ -0.88
PNKP-202ENST00000593706 NTF3P20783 257 aa9.56□□□□□ -0.88
PNKP-202ENST00000593706 MPV17L2Q567V2 206 aa9.56□□□□□ -0.88
PNKP-202ENST00000593706 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.56□□□□□ -0.88
PNKP-202ENST00000593706 FAM210AQ96ND0 272 aa9.56□□□□□ -0.88
PNKP-202ENST00000593706 USP17L23D6RBM5 183 aa9.55□□□□□ -0.88
PNKP-202ENST00000593706 MGPP08493 103 aa9.55□□□□□ -0.88
PNKP-202ENST00000593706 FAM231DQ6ZW35 169 aa9.55□□□□□ -0.88
PNKP-202ENST00000593706 CHCHD5Q9BSY4 110 aa9.55□□□□□ -0.88
PNKP-202ENST00000593706 TRGC1P0CF51 173 aa9.54□□□□□ -0.88
PNKP-202ENST00000593706 ENHOQ6UWT2 76 aa9.54□□□□□ -0.88
PNKP-202ENST00000593706 H7C1H1 209 aa9.53□□□□□ -0.88
PNKP-202ENST00000593706 PKIAP61925 76 aa9.53□□□□□ -0.88
PNKP-202ENST00000593706 MIAQ16674 131 aa9.53□□□□□ -0.88
PNKP-202ENST00000593706 IQCJQ1A5X6 159 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms