RNA–Protein interactions for RNA: ENST00000590181.5

LIG3-212, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,156 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-212ENST00000590181 RBFOX3A6NFN3 312 aa7.04□□□□□ -1.28
LIG3-212ENST00000590181 F5H697 171 aa7.04□□□□□ -1.28
LIG3-212ENST00000590181 IGLV2-8P01709 118 aa7.04□□□□□ -1.28
LIG3-212ENST00000590181 IGLC6P0CF74 106 aa7.04□□□□□ -1.28
LIG3-212ENST00000590181 ZNF56Q15929 161 aa7.04□□□□□ -1.28
LIG3-212ENST00000590181 TEX261Q6UWH6 196 aa7.04□□□□□ -1.28
LIG3-212ENST00000590181 NIT1Q86X76 327 aa7.04□□□□□ -1.28
LIG3-212ENST00000590181 DERL1Q9BUN8 251 aa7.04□□□□□ -1.28
LIG3-212ENST00000590181 TRBV6-8A0A0A6YYG3 113 aa7.03□□□□□ -1.28
LIG3-212ENST00000590181 CNFNQ9BYD5 112 aa7.03□□□□□ -1.28
LIG3-212ENST00000590181 TNFRSF18Q9Y5U5 241 aa7.03□□□□□ -1.28
LIG3-212ENST00000590181 RAB19A4D1S5 217 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 LRCOL1A6NCL2 159 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 IGHV3-30P01768 117 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 IGHV3-33P01772 117 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 IGHV3-30-3P0DP02 117 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 IGHV3-30-5P0DP03 117 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 GCSHP23434 173 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 RPL19P84098 196 aaKnown RBP7.02□□□□□ -1.29
LIG3-212ENST00000590181 SMIM15Q7Z3B0 74 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 Q8N976 141 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 NEXN-AS1Q8NBZ9 246 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 KIF25-AS1Q9Y6Z4 181 aa7.02□□□□□ -1.29
LIG3-212ENST00000590181 A8MWL6 223 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 C14orf177Q52M58 125 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 CT83Q5H943 113 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 ATRAIDQ6UW56 229 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 FAM231DQ6ZW35 169 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 NUDT10Q8NFP7 164 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 NUDT11Q96G61 164 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 TMEM70Q9BUB7 260 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 DPH3P1Q9H4G8 78 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 SMDT1Q9H4I9 107 aa7.01□□□□□ -1.29
LIG3-212ENST00000590181 RPP21Q9H633 154 aaKnown RBP7.01□□□□□ -1.29
LIG3-212ENST00000590181 TRBV20OR9-2A0A075B6H5 130 aa7□□□□□ -1.29
LIG3-212ENST00000590181 TRBV25-1A0A075B6N4 114 aa7□□□□□ -1.29
LIG3-212ENST00000590181 FAM231BA6NCW3 169 aa7□□□□□ -1.29
LIG3-212ENST00000590181 NTF3P20783 257 aa7□□□□□ -1.29
LIG3-212ENST00000590181 CTRLP40313 264 aa7□□□□□ -1.29
LIG3-212ENST00000590181 Q8N814 137 aa7□□□□□ -1.29
LIG3-212ENST00000590181 OCC1Q8TAD7 63 aa7□□□□□ -1.29
LIG3-212ENST00000590181 PGLYRP4Q96LB8 373 aa7□□□□□ -1.29
LIG3-212ENST00000590181 Q9HAA7 133 aa7□□□□□ -1.29
LIG3-212ENST00000590181 NIT2Q9NQR4 276 aa7□□□□□ -1.29
LIG3-212ENST00000590181 IGLV5-52A0A0A0MRZ9 124 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 TMEM262E9PQX1 116 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 M0QY20 66 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 FUSP35637 526 aaKnown RBP eCLIP6.99□□□□□ -1.29
LIG3-212ENST00000590181 FOXA3P55318 350 aaPredicted RBP6.99□□□□□ -1.29
LIG3-212ENST00000590181 MIAQ16674 131 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 IQCJQ1A5X6 159 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 FAM74A3Q4VXF1 159 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 RASL11AQ6T310 242 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 LYZL1Q6UWQ5 148 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 ALKAL2Q6UX46 152 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 TPPP3Q9BW30 176 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 EIF5A2Q9GZV4 153 aaKnown RBP6.99□□□□□ -1.29
LIG3-212ENST00000590181 Q9UF83 564 aa6.99□□□□□ -1.29
LIG3-212ENST00000590181 IGHV1-24A0A0C4DH33 117 aa6.98□□□□□ -1.29
LIG3-212ENST00000590181 A0A1B0GUV1 79 aa6.98□□□□□ -1.29
LIG3-212ENST00000590181 CRPP02741 224 aa6.98□□□□□ -1.29
LIG3-212ENST00000590181 BORCS7Q96B45 105 aa6.98□□□□□ -1.29
LIG3-212ENST00000590181 CHCHD5Q9BSY4 110 aa6.98□□□□□ -1.29
LIG3-212ENST00000590181 GFRA4Q9GZZ7 299 aa6.98□□□□□ -1.29
LIG3-212ENST00000590181 XGP55808 180 aa6.97□□□□□ -1.29
LIG3-212ENST00000590181 TWIST1Q15672 202 aa6.97□□□□□ -1.29
LIG3-212ENST00000590181 LCE2DQ5TA82 110 aaPredicted RBP6.97□□□□□ -1.29
LIG3-212ENST00000590181 C1orf43Q9BWL3 253 aa6.97□□□□□ -1.29
LIG3-212ENST00000590181 KLK12Q9UKR0 248 aa6.97□□□□□ -1.29
LIG3-212ENST00000590181 UBR4Q5T4S7 5183 aa6.96□□□□□ -1.29
LIG3-212ENST00000590181 hCG_2014768A0A024R1R8 64 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 TRAV8-4A0A0B4J246 113 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 H7C423 109 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 GATCO43716 136 aaKnown RBP6.96□□□□□ -1.3
LIG3-212ENST00000590181 NCR2O95944 276 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 MGPP08493 103 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 GZMBP10144 247 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 SUMO4Q6EEV6 95 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 C15orf54Q8N8G6 183 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 SMIM7Q9BQ49 75 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 PRR34Q9NV39 138 aa6.96□□□□□ -1.3
LIG3-212ENST00000590181 HMCN2Q8NDA2 5059 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 IGKV2D-24A0A075B6R9 120 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 MUC21A0A0G2JKD1 596 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 MUC21A0A140T8X8 626 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 J3QL48 77 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 K7EN84 100 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 PPP1R17O96001 155 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 ANGP03950 147 aaKnown RBP6.95□□□□□ -1.3
LIG3-212ENST00000590181 COTL1Q14019 142 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 CLRN3Q8NCR9 226 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 UBE2WQ96B02 151 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 RNASE7Q9H1E1 156 aaKnown RBP6.95□□□□□ -1.3
LIG3-212ENST00000590181 OSTCQ9NRP0 149 aa6.95□□□□□ -1.3
LIG3-212ENST00000590181 ZNF727A8MUV8 499 aa6.94□□□□□ -1.3
LIG3-212ENST00000590181 FAM229AH3BQW9 127 aa6.94□□□□□ -1.3
LIG3-212ENST00000590181 SMR3BP02814 79 aaPredicted RBP6.94□□□□□ -1.3
LIG3-212ENST00000590181 KRTAP10-1P60331 282 aa6.94□□□□□ -1.3
LIG3-212ENST00000590181 PEA15Q15121 130 aa6.94□□□□□ -1.3
LIG3-212ENST00000590181 DGAT2L7PQ6IED9 249 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms