RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 Q9HAA7 133 aa8.34□□□□□ -1.07
SS18-225ENST00000585121 SMCO4Q9NRQ5 59 aa8.34□□□□□ -1.07
SS18-225ENST00000585121 TRBV10-1A0A0K0K1A3 114 aa8.34□□□□□ -1.08
SS18-225ENST00000585121 LINC00694P0DN24 101 aa8.34□□□□□ -1.08
SS18-225ENST00000585121 CENPWQ5EE01 88 aa8.34□□□□□ -1.08
SS18-225ENST00000585121 TM2D2Q9BX73 214 aa8.34□□□□□ -1.08
SS18-225ENST00000585121 URGCP-MRPS24S4R325 110 aa8.34□□□□□ -1.08
SS18-225ENST00000585121 PPP1R2P9O14990 202 aa8.33□□□□□ -1.08
SS18-225ENST00000585121 RAB4BP61018 213 aa8.33□□□□□ -1.08
SS18-225ENST00000585121 LAGE3Q14657 143 aa8.33□□□□□ -1.08
SS18-225ENST00000585121 KCNIP4Q6PIL6 250 aa8.33□□□□□ -1.08
SS18-225ENST00000585121 SREK1IP1Q8N9Q2 155 aaPredicted RBP8.33□□□□□ -1.08
SS18-225ENST00000585121 OR10AG1Q8NH19 301 aa8.33□□□□□ -1.08
SS18-225ENST00000585121 ISOC2Q96AB3 205 aa8.33□□□□□ -1.08
SS18-225ENST00000585121 BIN3Q9NQY0 253 aa8.33□□□□□ -1.08
SS18-225ENST00000585121 APOBP04114 4563 aaKnown RBP8.33□□□□□ -1.08
SS18-225ENST00000585121 XKRY2A2RUG3 117 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 SNAI2O43623 268 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 IGLV2-8P01709 118 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 OR5AL1P0C617 328 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 SMIM17P0DL12 118 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 RPS20P60866 119 aaKnown RBP8.32□□□□□ -1.08
SS18-225ENST00000585121 ZNF56Q15929 161 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 MAPKAPK5-AS1Q8N8E1 139 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 SSBP4Q9BWG4 385 aaPredicted RBP8.32□□□□□ -1.08
SS18-225ENST00000585121 Q9UF83 564 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 PCLOQ9Y6V0 5065 aa8.32□□□□□ -1.08
SS18-225ENST00000585121 TRBV7-3A0A075B6L6 115 aa8.31□□□□□ -1.08
SS18-225ENST00000585121 TRAV8-3A0A0A6YYJ7 113 aa8.31□□□□□ -1.08
SS18-225ENST00000585121 F5H697 171 aa8.31□□□□□ -1.08
SS18-225ENST00000585121 SSTP61278 116 aa8.31□□□□□ -1.08
SS18-225ENST00000585121 KRTAP17-1Q9BYP8 105 aa8.31□□□□□ -1.08
SS18-225ENST00000585121 MUC21A0A0G2JKD1 596 aa8.3□□□□□ -1.08
SS18-225ENST00000585121 MUC21A0A140T8X8 626 aa8.3□□□□□ -1.08
SS18-225ENST00000585121 K7EN84 100 aa8.3□□□□□ -1.08
SS18-225ENST00000585121 OR2D3Q8NGH3 330 aa8.3□□□□□ -1.08
SS18-225ENST00000585121 AP1S3Q96PC3 154 aa8.3□□□□□ -1.08
SS18-225ENST00000585121 TPPP3Q9BW30 176 aa8.3□□□□□ -1.08
SS18-225ENST00000585121 OSTCQ9NRP0 149 aa8.3□□□□□ -1.08
SS18-225ENST00000585121 A0A087WX48 190 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 P01737 135 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 UBE2D3P61077 147 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 UBE2D2P62837 147 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 FAM231DQ6ZW35 169 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 C15orf54Q8N8G6 183 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 FER1L6-AS1Q8NA97 138 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 OR10G8Q8NGN5 311 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 RMI2Q96E14 147 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 IMMP2LQ96T52 175 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 FUSP35637 526 aaKnown RBP eCLIP8.29□□□□□ -1.08
SS18-225ENST00000585121 ELOBQ15370 118 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 DAZ4Q86SG3 579 aaKnown RBP8.29□□□□□ -1.08
SS18-225ENST00000585121 CBLN2Q8IUK8 224 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 NTN5Q8WTR8 489 aaPredicted RBP8.29□□□□□ -1.08
SS18-225ENST00000585121 DAZ3Q9NR90 486 aaKnown RBP8.29□□□□□ -1.08
SS18-225ENST00000585121 COX11Q9Y6N1 276 aa8.29□□□□□ -1.08
SS18-225ENST00000585121 IGLV5-52A0A0A0MRZ9 124 aa8.28□□□□□ -1.08
SS18-225ENST00000585121 C19orf71A6NCJ1 209 aa8.28□□□□□ -1.08
SS18-225ENST00000585121 F2Z2F3 143 aa8.28□□□□□ -1.08
SS18-225ENST00000585121 GCSHP23434 173 aa8.28□□□□□ -1.08
SS18-225ENST00000585121 CACNG7P62955 275 aa8.28□□□□□ -1.08
SS18-225ENST00000585121 NIT1Q86X76 327 aa8.28□□□□□ -1.08
SS18-225ENST00000585121 NEXN-AS1Q8NBZ9 246 aa8.28□□□□□ -1.08
SS18-225ENST00000585121 CHCHD7Q9BUK0 85 aa8.28□□□□□ -1.08
SS18-225ENST00000585121 LRCOL1A6NCL2 159 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 COLCA2A8K830 154 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 TMEM262E9PQX1 116 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 GZMBP10144 247 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 S100PP25815 95 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 TMEM97Q5BJF2 176 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 Q8N1X5 172 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 Q8N3U1 123 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 ABCA13Q86UQ4 5058 aa8.27□□□□□ -1.09
SS18-225ENST00000585121 TRBV6-8A0A0A6YYG3 113 aa8.26□□□□□ -1.09
SS18-225ENST00000585121 H7C1H1 209 aa8.26□□□□□ -1.09
SS18-225ENST00000585121 IGLC6P0CF74 106 aa8.26□□□□□ -1.09
SS18-225ENST00000585121 PKIAP61925 76 aa8.26□□□□□ -1.09
SS18-225ENST00000585121 Q8N814 137 aa8.26□□□□□ -1.09
SS18-225ENST00000585121 BTF3L4Q96K17 158 aa8.26□□□□□ -1.09
SS18-225ENST00000585121 YPEL4Q96NS1 127 aa8.26□□□□□ -1.09
SS18-225ENST00000585121 TRBV24-1A0A075B6N3 115 aa8.25□□□□□ -1.09
SS18-225ENST00000585121 MGPP08493 103 aa8.25□□□□□ -1.09
SS18-225ENST00000585121 TRGC1P0CF51 173 aa8.25□□□□□ -1.09
SS18-225ENST00000585121 NUDT10Q8NFP7 164 aa8.25□□□□□ -1.09
SS18-225ENST00000585121 NUDT11Q96G61 164 aa8.25□□□□□ -1.09
SS18-225ENST00000585121 KLK12Q9UKR0 248 aa8.25□□□□□ -1.09
SS18-225ENST00000585121 V9GYV3 84 aa8.25□□□□□ -1.09
SS18-225ENST00000585121 IGKV2D-24A0A075B6R9 120 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 TRAV9-1A0A075B6T8 112 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 GATCO43716 136 aaKnown RBP8.24□□□□□ -1.09
SS18-225ENST00000585121 Q0VG73 95 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 UBE2WQ96B02 151 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 CHCHD5Q9BSY4 110 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 RNASE7Q9H1E1 156 aaKnown RBP8.24□□□□□ -1.09
SS18-225ENST00000585121 KIF25-AS1Q9Y6Z4 181 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 KRTAP10-1P60331 282 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 CT83Q5H943 113 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 LYZL1Q6UWQ5 148 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 DNAJC30Q96LL9 226 aa8.24□□□□□ -1.09
SS18-225ENST00000585121 KRTAP4-5Q9BYR2 181 aa8.24□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 242.6 ms