RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 GAGE4Q13068 117 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 GAGE5Q13069 117 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 GAGE13Q4V321 117 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 NEXN-AS1Q8NBZ9 246 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 RNF185Q96GF1 192 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 DNAJC30Q96LL9 226 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 TRBV7-3A0A075B6L6 115 aa11.85□□□□□ -0.51
NUP88-210ENST00000574867 TRAV26-2A0A0B4J265 109 aa11.84□□□□□ -0.51
NUP88-210ENST00000574867 CCL18P55774 89 aa11.83□□□□□ -0.51
NUP88-210ENST00000574867 COX19Q49B96 90 aa11.83□□□□□ -0.51
NUP88-210ENST00000574867 ZNRF2Q8NHG8 242 aa11.83□□□□□ -0.51
NUP88-210ENST00000574867 NIT2Q9NQR4 276 aa11.83□□□□□ -0.51
NUP88-210ENST00000574867 Q9UF83 564 aa11.83□□□□□ -0.51
NUP88-210ENST00000574867 ATP6V0E2Q8NHE4 81 aa11.83□□□□□ -0.52
NUP88-210ENST00000574867 TNFRSF18Q9Y5U5 241 aa11.83□□□□□ -0.52
NUP88-210ENST00000574867 UBE2D3P61077 147 aa11.82□□□□□ -0.52
NUP88-210ENST00000574867 UBE2D2P62837 147 aa11.82□□□□□ -0.52
NUP88-210ENST00000574867 ELOBQ15370 118 aa11.82□□□□□ -0.52
NUP88-210ENST00000574867 LGALS9CQ6DKI2 356 aa11.82□□□□□ -0.52
NUP88-210ENST00000574867 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.82□□□□□ -0.52
NUP88-210ENST00000574867 SMCO4Q9NRQ5 59 aa11.82□□□□□ -0.52
NUP88-210ENST00000574867 TIRAPP58753 221 aa11.82□□□□□ -0.52
NUP88-210ENST00000574867 MRPL51Q4U2R6 128 aaKnown RBP11.82□□□□□ -0.52
NUP88-210ENST00000574867 TRBV24-1A0A075B6N3 115 aa11.81□□□□□ -0.52
NUP88-210ENST00000574867 PPP1R17O96001 155 aa11.81□□□□□ -0.52
NUP88-210ENST00000574867 UBE2DNLQ8IWF7 75 aa11.81□□□□□ -0.52
NUP88-210ENST00000574867 LINC00476Q8WZB0 136 aa11.81□□□□□ -0.52
NUP88-210ENST00000574867 PLECQ15149 4684 aaKnown RBP11.81□□□□□ -0.52
NUP88-210ENST00000574867 HLA-DQA1P01909 254 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 TMEM136Q6ZRR5 245 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 PPBPP02775 128 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 ESRGQ1W209 222 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 OR10J3Q5JRS4 329 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 LYPD5Q6UWN5 251 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 DAZ4Q86SG3 579 aaKnown RBP11.8□□□□□ -0.52
NUP88-210ENST00000574867 CBLN2Q8IUK8 224 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 GNB1LQ9BYB4 327 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 GTSF1LQ9H1H1 148 aa11.8□□□□□ -0.52
NUP88-210ENST00000574867 DAZ3Q9NR90 486 aaKnown RBP11.8□□□□□ -0.52
NUP88-210ENST00000574867 TGIF2-C20orf24A0A0A6YYL0 155 aa11.79□□□□□ -0.52
NUP88-210ENST00000574867 MT-ND6P03923 174 aa11.79□□□□□ -0.52
NUP88-210ENST00000574867 CKS2P33552 79 aa11.79□□□□□ -0.52
NUP88-210ENST00000574867 RPL39LQ96EH5 51 aaKnown RBP11.79□□□□□ -0.52
NUP88-210ENST00000574867 TRBV6-5A0A0K0K1A5 114 aa11.79□□□□□ -0.52
NUP88-210ENST00000574867 NCR2O95944 276 aa11.79□□□□□ -0.52
NUP88-210ENST00000574867 YPEL4Q96NS1 127 aa11.79□□□□□ -0.52
NUP88-210ENST00000574867 MRPS16Q9Y3D3 137 aaKnown RBP11.79□□□□□ -0.52
NUP88-210ENST00000574867 LINC00588Q9Y4M8 146 aa11.79□□□□□ -0.52
NUP88-210ENST00000574867 D6R8Y8 96 aa11.77□□□□□ -0.52
NUP88-210ENST00000574867 SMKR1H3BMG3 65 aa11.77□□□□□ -0.52
NUP88-210ENST00000574867 ORMDL3Q8N138 153 aa11.77□□□□□ -0.52
NUP88-210ENST00000574867 UPK3BQ9BT76 320 aa11.77□□□□□ -0.52
NUP88-210ENST00000574867 GAS8-AS1O95177 125 aa11.77□□□□□ -0.53
NUP88-210ENST00000574867 RPS10P46783 165 aaKnown RBP11.77□□□□□ -0.53
NUP88-210ENST00000574867 TMEM97Q5BJF2 176 aa11.77□□□□□ -0.53
NUP88-210ENST00000574867 LY6G6CO95867 125 aa11.76□□□□□ -0.53
NUP88-210ENST00000574867 NRACQ8N912 160 aa11.76□□□□□ -0.53
NUP88-210ENST00000574867 ST20Q9HBF5 79 aa11.76□□□□□ -0.53
NUP88-210ENST00000574867 LCE6AA0A183 80 aa11.75□□□□□ -0.53
NUP88-210ENST00000574867 SDHAF1A6NFY7 115 aa11.75□□□□□ -0.53
NUP88-210ENST00000574867 PHOX2AO14813 284 aa11.75□□□□□ -0.53
NUP88-210ENST00000574867 SCO1O75880 301 aa11.75□□□□□ -0.53
NUP88-210ENST00000574867 LELP1Q5T871 98 aa11.75□□□□□ -0.53
NUP88-210ENST00000574867 APCSP02743 223 aa11.75□□□□□ -0.53
NUP88-210ENST00000574867 LAMTOR2Q9Y2Q5 125 aa11.75□□□□□ -0.53
NUP88-210ENST00000574867 IGHV3-38A0A0C4DH36 116 aa11.74□□□□□ -0.53
NUP88-210ENST00000574867 C20orf78Q9BR46 151 aa11.74□□□□□ -0.53
NUP88-210ENST00000574867 ALMS1Q8TCU4 4167 aa11.74□□□□□ -0.53
NUP88-210ENST00000574867 TNFRSF6BO95407 300 aa11.74□□□□□ -0.53
NUP88-210ENST00000574867 SUMO2P61956 95 aaKnown RBP11.74□□□□□ -0.53
NUP88-210ENST00000574867 PRELID3AQ96N28 172 aa11.74□□□□□ -0.53
NUP88-210ENST00000574867 TMEM70Q9BUB7 260 aa11.74□□□□□ -0.53
NUP88-210ENST00000574867 TRAV8-6A0A0B4J262 113 aa11.73□□□□□ -0.53
NUP88-210ENST00000574867 MRPL18Q9H0U6 180 aaKnown RBP11.72□□□□□ -0.53
NUP88-210ENST00000574867 TRBV6-8A0A0A6YYG3 113 aa11.72□□□□□ -0.53
NUP88-210ENST00000574867 TRBV27A0A0K0K1C4 114 aa11.72□□□□□ -0.53
NUP88-210ENST00000574867 NPYP01303 97 aa11.72□□□□□ -0.53
NUP88-210ENST00000574867 POLR2KP53803 58 aaKnown RBP11.72□□□□□ -0.53
NUP88-210ENST00000574867 RPL32P62910 135 aaKnown RBP11.72□□□□□ -0.53
NUP88-210ENST00000574867 COTL1Q14019 142 aa11.72□□□□□ -0.53
NUP88-210ENST00000574867 I3L3M4 83 aa11.71□□□□□ -0.53
NUP88-210ENST00000574867 TRAPPC1Q9Y5R8 145 aa11.71□□□□□ -0.53
NUP88-210ENST00000574867 LYSTQ99698 3801 aa11.7□□□□□ -0.54
NUP88-210ENST00000574867 TRBV25-1A0A075B6N4 114 aa11.7□□□□□ -0.54
NUP88-210ENST00000574867 VCYO14598 125 aa11.7□□□□□ -0.54
NUP88-210ENST00000574867 FABP9Q0Z7S8 132 aa11.7□□□□□ -0.54
NUP88-210ENST00000574867 IGHV1-24A0A0C4DH33 117 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 SIVA1O15304 175 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 PMCHP20382 165 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 IQCJQ1A5X6 159 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 NTM-AS1Q6ZSK4 140 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 WFDC10BQ8IUB3 73 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 Q9H8V8 135 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 KIAA1644Q3SXP7 199 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 SMIM2Q9BVW6 85 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 MAP1LC3AQ9H492 121 aa11.69□□□□□ -0.54
NUP88-210ENST00000574867 KIR2DL4Q99706 377 aa11.68□□□□□ -0.54
NUP88-210ENST00000574867 PRSS47A8MTI9 375 aa11.67□□□□□ -0.54
NUP88-210ENST00000574867 TCAPO15273 167 aa11.67□□□□□ -0.54
NUP88-210ENST00000574867 PKIAP61925 76 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms