RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-217ENST00000574022 ZNF56Q15929 161 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 FAM74A4Q5TZK3 123 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 LINC00208Q96KT6 92 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 BET1LQ9NYM9 111 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 TOPAZ1Q8N9V7 1692 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 ABCA3Q99758 1704 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 ANKRD26Q9UPS8 1709 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 ZGRF1Q86YA3 2104 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 DOCK2Q92608 1830 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 DOCK1Q14185 1865 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 CACNA1BQ00975 2339 aa0.8□□□□□ -2.28
CHD3-217ENST00000574022 CITO14578 2027 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 TET3O43151 1660 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 TRBV7-1A0A0A6YYK4 115 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 A0A1W2PPM0 123 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 RBAKDNA6NC62 111 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 TMEM262E9PQX1 116 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 ANGP03950 147 aaKnown RBP0.79□□□□□ -2.28
CHD3-217ENST00000574022 PKIAP61925 76 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 DCDP81605 110 aaKnown RBP0.79□□□□□ -2.28
CHD3-217ENST00000574022 SSBP1Q04837 148 aaKnown RBP0.79□□□□□ -2.28
CHD3-217ENST00000574022 KLKP1Q107X0 134 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 NCMAPQ5T1S8 102 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 Q6ZSA8 131 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 COX7B2Q8TF08 81 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 DPH3P1Q9H4G8 78 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 LINC00312Q9Y6C7 94 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 ARFGEF1Q9Y6D6 1849 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 PPIP5K1Q6PFW1 1433 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 SCAPERQ9BY12 1400 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 ABCC10Q5T3U5 1492 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 PXDNQ92626 1479 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 TTC37Q6PGP7 1564 aa0.79□□□□□ -2.28
CHD3-217ENST00000574022 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.78□□□□□ -2.28
CHD3-217ENST00000574022 PRB1P04280 392 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 ELOF1P60002 83 aaKnown RBP0.78□□□□□ -2.28
CHD3-217ENST00000574022 KRTAP12-4P60329 112 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 C10orf128Q5T292 105 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 MYOZ3Q8TDC0 251 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 CYP4F30PQ9H0H9 118 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 TMEM14BQ9NUH8 114 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 SDK1Q7Z5N4 2213 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 ZNF609O15014 1411 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 FYCO1Q9BQS8 1478 aa0.78□□□□□ -2.28
CHD3-217ENST00000574022 CHD1O14646 1710 aa0.78□□□□□ -2.29
CHD3-217ENST00000574022 PRDM2Q13029 1718 aa0.78□□□□□ -2.29
CHD3-217ENST00000574022 LOC285556D6RIA3 1793 aa0.78□□□□□ -2.29
CHD3-217ENST00000574022 SIPA1L3O60292 1781 aaPredicted RBP0.78□□□□□ -2.29
CHD3-217ENST00000574022 TCHHQ07283 1943 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 CLPSL1A2RUU4 121 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 H3BQ15 152 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 SNCAP37840 140 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 EDDM3BP56851 147 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 COL5A1-AS1Q5SY13 56 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 KRTAP5-6Q6L8G9 129 aaPredicted RBP0.77□□□□□ -2.29
CHD3-217ENST00000574022 C10orf99Q6UWK7 81 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 AP4S1Q9Y587 144 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 V9GYV3 84 aa0.77□□□□□ -2.29
CHD3-217ENST00000574022 PRRC2BQ5JSZ5 2229 aaKnown RBP0.77□□□□□ -2.29
CHD3-217ENST00000574022 MAP2P11137 1827 aaKnown RBP0.76□□□□□ -2.29
CHD3-217ENST00000574022 A0A087WTM6 91 aa0.76□□□□□ -2.29
CHD3-217ENST00000574022 NAP1L6A6NFF2 107 aa0.76□□□□□ -2.29
CHD3-217ENST00000574022 GNG11P61952 73 aa0.76□□□□□ -2.29
CHD3-217ENST00000574022 KRTAP21-3Q3LHN1 58 aa0.76□□□□□ -2.29
CHD3-217ENST00000574022 KRTAP5-5Q701N2 237 aaPredicted RBP0.76□□□□□ -2.29
CHD3-217ENST00000574022 TSLPQ969D9 159 aa0.76□□□□□ -2.29
CHD3-217ENST00000574022 LINC00474Q9P2X8 69 aa0.76□□□□□ -2.29
CHD3-217ENST00000574022 SNRNP200O75643 2136 aaKnown RBP0.76□□□□□ -2.29
CHD3-217ENST00000574022 TOP2BQ02880 1626 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 RB1CC1Q8TDY2 1594 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 LAMC3Q9Y6N6 1575 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 GAPVD1Q14C86 1478 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 TEX14Q8IWB6 1497 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 SHANK2Q9UPX8 1470 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 ABCC5O15440 1437 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 SPAG17Q6Q759 2223 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 TRBV7-3A0A075B6L6 115 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 MPC2O95563 127 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 PPP1R17O96001 155 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 LINC00032P0C843 101 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 SPINK13Q1W4C9 94 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 KRTAP5-1Q6L8H4 278 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 MGST2Q99735 147 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 SNHG12Q9BXW3 62 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 SCP2D1Q9UJQ7 156 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 LENEPQ9Y5L5 61 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 FBN1P35555 2871 aaKnown RBP0.75□□□□□ -2.29
CHD3-217ENST00000574022 TANC1Q9C0D5 1861 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 SCRIBQ14160 1630 aa0.75□□□□□ -2.29
CHD3-217ENST00000574022 SORL1Q92673 2214 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 BAZ1AQ9NRL2 1556 aaPredicted RBP0.74□□□□□ -2.29
CHD3-217ENST00000574022 MRC1P22897 1456 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 GOLGA3Q08378 1498 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 RAPGEF2Q9Y4G8 1499 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 TROQ12816 1431 aaPredicted RBP0.74□□□□□ -2.29
CHD3-217ENST00000574022 PSME4Q14997 1843 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 CRYM-AS1A6NIL9 109 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 GNGT2O14610 69 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 LY6G6CO95867 125 aa0.74□□□□□ -2.29
CHD3-217ENST00000574022 ARL14EPLP0DKL9 152 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms