RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 IGHV3-33P01772 117 aa5□□□□□ -1.61
NUP88-205ENST00000572809 IGHV3-30-3P0DP02 117 aa5□□□□□ -1.61
NUP88-205ENST00000572809 IGHV3-30-5P0DP03 117 aa5□□□□□ -1.61
NUP88-205ENST00000572809 SULT1A2P50226 295 aa5□□□□□ -1.61
NUP88-205ENST00000572809 RPL19P84098 196 aaKnown RBP5□□□□□ -1.61
NUP88-205ENST00000572809 FAM74A4Q5TZK3 123 aa5□□□□□ -1.61
NUP88-205ENST00000572809 ZFP82Q8N141 532 aa5□□□□□ -1.61
NUP88-205ENST00000572809 C14orf178Q8N769 122 aaPredicted RBP5□□□□□ -1.61
NUP88-205ENST00000572809 Q9UF83 564 aa5□□□□□ -1.61
NUP88-205ENST00000572809 PKHD1P08F94 4074 aa5□□□□□ -1.61
NUP88-205ENST00000572809 DNAH11Q96DT5 4516 aa4.99□□□□□ -1.61
NUP88-205ENST00000572809 PSCAO43653 123 aa4.99□□□□□ -1.61
NUP88-205ENST00000572809 C1QBP02746 253 aa4.99□□□□□ -1.61
NUP88-205ENST00000572809 CXCL1P09341 107 aa4.99□□□□□ -1.61
NUP88-205ENST00000572809 RPL35P42766 123 aaKnown RBP4.99□□□□□ -1.61
NUP88-205ENST00000572809 PRR27Q6MZM9 219 aa4.99□□□□□ -1.61
NUP88-205ENST00000572809 SLC51BQ86UW2 128 aa4.99□□□□□ -1.61
NUP88-205ENST00000572809 A0A087WWC5 75 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 LINC00694P0DN24 101 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 FUSP35637 526 aaKnown RBP eCLIP4.98□□□□□ -1.61
NUP88-205ENST00000572809 MAPKAPK5-AS1Q8N8E1 139 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 OR10AG1Q8NH19 301 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 C11orf52Q96A22 123 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 DERL1Q9BUN8 251 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 Q9HAA7 133 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 KIAA1109Q2LD37 5005 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 HERC2O95714 4834 aa4.98□□□□□ -1.61
NUP88-205ENST00000572809 TRBV7-3A0A075B6L6 115 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 MUC21A0A0G2JKD1 596 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 TRBV10-1A0A0K0K1A3 114 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 MUC21A0A140T8X8 626 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 RAB19A4D1S5 217 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 SNAI2O43623 268 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 PDE6DO43924 150 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 IFNA1P01562 189 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 IGLV2-8P01709 118 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 OR5AL1P0C617 328 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 RAB4BP61018 213 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 SSTP61278 116 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 RPL36AP83881 106 aaKnown RBP4.97□□□□□ -1.61
NUP88-205ENST00000572809 MEF2BQ02080 365 aaPredicted RBP4.97□□□□□ -1.61
NUP88-205ENST00000572809 SPANXN1Q5VSR9 72 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 AKAP14Q86UN6 197 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 RPL36ALQ969Q0 106 aaKnown RBP4.97□□□□□ -1.61
NUP88-205ENST00000572809 MED9Q9NWA0 146 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 COX11Q9Y6N1 276 aa4.97□□□□□ -1.61
NUP88-205ENST00000572809 DYNC1H1Q14204 4646 aaKnown RBP4.97□□□□□ -1.61
NUP88-205ENST00000572809 TRAV8-3A0A0A6YYJ7 113 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 LRCOL1A6NCL2 159 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 TAGLN2P37802 199 aaKnown RBP4.96□□□□□ -1.62
NUP88-205ENST00000572809 GNG4P50150 75 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 UBE2D3P61077 147 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 UBE2D2P62837 147 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 LAGE3Q14657 143 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 ZNF56Q15929 161 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 CENPWQ5EE01 88 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 DAZ4Q86SG3 579 aaKnown RBP4.96□□□□□ -1.62
NUP88-205ENST00000572809 NIT1Q86X76 327 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 SMIM12Q96EX1 92 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 DAZ3Q9NR90 486 aaKnown RBP4.96□□□□□ -1.62
NUP88-205ENST00000572809 VAX2Q9UIW0 290 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 URGCP-MRPS24S4R325 110 aa4.96□□□□□ -1.62
NUP88-205ENST00000572809 XKRY2A2RUG3 117 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 C19orf71A6NCJ1 209 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 SMIM17P0DL12 118 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 GZMBP10144 247 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 BCL2P10415 239 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 RPS20P60866 119 aaKnown RBP4.95□□□□□ -1.62
NUP88-205ENST00000572809 C9orf62Q8N4C0 152 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 SREK1IP1Q8N9Q2 155 aaPredicted RBP4.95□□□□□ -1.62
NUP88-205ENST00000572809 NEXN-AS1Q8NBZ9 246 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 OR2D3Q8NGH3 330 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 OR10G8Q8NGN5 311 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 PRSS3P2Q8NHM4 247 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 BIN3Q9NQY0 253 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 KIF25-AS1Q9Y6Z4 181 aa4.95□□□□□ -1.62
NUP88-205ENST00000572809 A0A087WX48 190 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 TRBV6-8A0A0A6YYG3 113 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 RBFOX3A6NFN3 312 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 TMEM262E9PQX1 116 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 F2Z2F3 143 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 P01737 135 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 IGLC6P0CF74 106 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 KRTAP10-1P60331 282 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 ELOBQ15370 118 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 KCNIP4Q6PIL6 250 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 Q8N814 137 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 FER1L6-AS1Q8NA97 138 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 NTN5Q8WTR8 489 aaPredicted RBP4.94□□□□□ -1.62
NUP88-205ENST00000572809 TPPP3Q9BW30 176 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 KLK12Q9UKR0 248 aa4.94□□□□□ -1.62
NUP88-205ENST00000572809 TRBV20OR9-2A0A075B6H5 130 aa4.93□□□□□ -1.62
NUP88-205ENST00000572809 IGLV5-52A0A0A0MRZ9 124 aa4.93□□□□□ -1.62
NUP88-205ENST00000572809 XGP55808 180 aa4.93□□□□□ -1.62
NUP88-205ENST00000572809 CACNG7P62955 275 aa4.93□□□□□ -1.62
NUP88-205ENST00000572809 LYZL1Q6UWQ5 148 aa4.93□□□□□ -1.62
NUP88-205ENST00000572809 ALKAL2Q6UX46 152 aa4.93□□□□□ -1.62
NUP88-205ENST00000572809 OCC1Q8TAD7 63 aa4.93□□□□□ -1.62
NUP88-205ENST00000572809 RMI2Q96E14 147 aa4.93□□□□□ -1.62
NUP88-205ENST00000572809 AP1S3Q96PC3 154 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms