RNA–Protein interactions for RNA: ENST00000563739.5

SF3B3-204, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 1,105 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-204ENST00000563739 SMIM7Q9BQ49 75 aa6.68□□□□□ -1.34
SF3B3-204ENST00000563739 PARLQ9H300 379 aa6.68□□□□□ -1.34
SF3B3-204ENST00000563739 TRAV8-6A0A0B4J262 113 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 SCO2A0A1W2PP80 73 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 M0R2P5 195 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 ZNF674Q2M3X9 581 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 CFAP126Q5VTH2 177 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 SH2D6Q7Z4S9 175 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 C11orf52Q96A22 123 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 FMC1Q96HJ9 113 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 TM2D2Q9BX73 214 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 TMEM242Q9NWH2 141 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 C11orf21Q9P2W6 132 aa6.67□□□□□ -1.34
SF3B3-204ENST00000563739 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP6.67□□□□□ -1.34
SF3B3-204ENST00000563739 TRGV11A0A075B6L2 103 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 TRAV21A0A0B4J279 112 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 TRBV6-1A0A0K0K1D8 114 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 GCGP01275 180 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 UBE2G1P62253 170 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 RPL23P62829 140 aaKnown RBP6.66□□□□□ -1.34
SF3B3-204ENST00000563739 SMUG1Q53HV7 270 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 SAPCD1Q5SSQ6 148 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 YPEL4Q96NS1 127 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 CTDSP1Q9GZU7 261 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 GTSF1LQ9H1H1 148 aa6.66□□□□□ -1.34
SF3B3-204ENST00000563739 LOC105371267A0A1B0GV96 52 aa6.65□□□□□ -1.34
SF3B3-204ENST00000563739 LTAP01374 205 aa6.65□□□□□ -1.34
SF3B3-204ENST00000563739 MT-ND4LP03901 98 aa6.65□□□□□ -1.34
SF3B3-204ENST00000563739 ZNF80P51504 273 aaPredicted RBP6.65□□□□□ -1.34
SF3B3-204ENST00000563739 ADIRFQ15847 76 aa6.65□□□□□ -1.34
SF3B3-204ENST00000563739 ISOC2Q96AB3 205 aa6.65□□□□□ -1.34
SF3B3-204ENST00000563739 NAGKQ9UJ70 344 aa6.65□□□□□ -1.34
SF3B3-204ENST00000563739 IGHV3-73A0A0B4J1V6 119 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 TRBV6-4A0A1B0GX49 114 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 S100A9P06702 114 aaKnown RBP6.64□□□□□ -1.35
SF3B3-204ENST00000563739 PFN1P07737 140 aaKnown RBP6.64□□□□□ -1.35
SF3B3-204ENST00000563739 RHOHQ15669 191 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 FAM159AQ6UWV7 190 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 COX8CQ7Z4L0 72 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 ATP6V0E2Q8NHE4 81 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 ANAPC16Q96DE5 110 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 ZC2HC1AQ96GY0 325 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 ZFP30Q9Y2G7 519 aa6.64□□□□□ -1.35
SF3B3-204ENST00000563739 TRAV8-3A0A0A6YYJ7 113 aa6.63□□□□□ -1.35
SF3B3-204ENST00000563739 RAB5AP20339 215 aa6.63□□□□□ -1.35
SF3B3-204ENST00000563739 RPL35P42766 123 aaKnown RBP6.63□□□□□ -1.35
SF3B3-204ENST00000563739 LINC01551Q86U37 167 aa6.63□□□□□ -1.35
SF3B3-204ENST00000563739 C9orf85Q96MD7 179 aa6.63□□□□□ -1.35
SF3B3-204ENST00000563739 DERL1Q9BUN8 251 aa6.63□□□□□ -1.35
SF3B3-204ENST00000563739 PGPEP1LA6NFU8 196 aa6.62□□□□□ -1.35
SF3B3-204ENST00000563739 ELOBQ15370 118 aa6.62□□□□□ -1.35
SF3B3-204ENST00000563739 UFSP1Q6NVU6 142 aa6.62□□□□□ -1.35
SF3B3-204ENST00000563739 Q6ZRU5 148 aa6.62□□□□□ -1.35
SF3B3-204ENST00000563739 Q8N976 141 aa6.62□□□□□ -1.35
SF3B3-204ENST00000563739 OCC1Q8TAD7 63 aa6.62□□□□□ -1.35
SF3B3-204ENST00000563739 KCNS1Q96KK3 526 aa6.62□□□□□ -1.35
SF3B3-204ENST00000563739 TRBV20OR9-2A0A075B6H5 130 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 PPP1R2P9O14990 202 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 EIF4EBP3O60516 100 aaPredicted RBP6.61□□□□□ -1.35
SF3B3-204ENST00000563739 SH2D1AO60880 128 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 CXCL1P09341 107 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 CRIP1P50238 77 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 CIRBPQ14011 172 aaKnown RBP6.61□□□□□ -1.35
SF3B3-204ENST00000563739 CENPWQ5EE01 88 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 FAM162BQ5T6X4 162 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 NIT1Q86X76 327 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 BAGE2Q86Y30 109 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 MLST8Q9BVC4 326 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 SAMD10Q9BYL1 202 aa6.61□□□□□ -1.35
SF3B3-204ENST00000563739 TGIF2-C20orf24A0A0A6YYL0 155 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 IGKV3D-20A0A0C4DH25 116 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 GAGE12JA6NER3 117 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 FABP5P3A8MUU1 101 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 C1orf196B1AJZ1 125 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 GAS8-AS1O95177 125 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 RNASE3P12724 160 aaKnown RBP6.6□□□□□ -1.35
SF3B3-204ENST00000563739 GAGE1Q13065 139 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 GAGE4Q13068 117 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 GAGE5Q13069 117 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 ZNF876PQ49A33 203 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 GAGE13Q4V321 117 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 IMMP2LQ96T52 175 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 PRADC1Q9BSG0 188 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 URGCP-MRPS24S4R325 110 aa6.6□□□□□ -1.35
SF3B3-204ENST00000563739 TRBV24-1A0A075B6N3 115 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 IGKV2D-24A0A075B6R9 120 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 K7EN84 100 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 S100PP25815 95 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 GNG4P50150 75 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 RAB5BP61020 215 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 KRTAP26-1Q6PEX3 210 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 C14orf178Q8N769 122 aaPredicted RBP6.59□□□□□ -1.35
SF3B3-204ENST00000563739 OR10G8Q8NGN5 311 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 SMIM12Q96EX1 92 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 SFRP2Q96HF1 295 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 JPT2Q9H910 190 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 KLK12Q9UKR0 248 aa6.59□□□□□ -1.35
SF3B3-204ENST00000563739 PRSS1P07477 247 aa6.58□□□□□ -1.36
SF3B3-204ENST00000563739 MGST1P10620 155 aaKnown RBP6.58□□□□□ -1.36
SF3B3-204ENST00000563739 RPS10P46783 165 aaKnown RBP6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 81.1 ms