RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 RASL11AQ6T310 242 aa6.99□□□□□ -1.29
USP3-216ENST00000559873 ATP6V0E2Q8NHE4 81 aa6.99□□□□□ -1.29
USP3-216ENST00000559873 TNFRSF18Q9Y5U5 241 aa6.99□□□□□ -1.29
USP3-216ENST00000559873 A0A1B0GXF2 115 aa6.98□□□□□ -1.29
USP3-216ENST00000559873 M0QY20 66 aa6.98□□□□□ -1.29
USP3-216ENST00000559873 PPP1R17O96001 155 aa6.98□□□□□ -1.29
USP3-216ENST00000559873 ZNRF2Q8NHG8 242 aa6.98□□□□□ -1.29
USP3-216ENST00000559873 MRAP2Q96G30 205 aa6.98□□□□□ -1.29
USP3-216ENST00000559873 UPK3BQ9BT76 320 aa6.98□□□□□ -1.29
USP3-216ENST00000559873 GTSF1LQ9H1H1 148 aa6.98□□□□□ -1.29
USP3-216ENST00000559873 MRPS16Q9Y3D3 137 aaKnown RBP6.98□□□□□ -1.29
USP3-216ENST00000559873 UBE2D3P61077 147 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 UBE2D2P62837 147 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 ESRGQ1W209 222 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 TMEM97Q5BJF2 176 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 LYPD5Q6UWN5 251 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 DAZ4Q86SG3 579 aaKnown RBP6.97□□□□□ -1.29
USP3-216ENST00000559873 SLC7A5P1Q8MH63 180 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 NEXN-AS1Q8NBZ9 246 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 NIT2Q9NQR4 276 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 DAZ3Q9NR90 486 aaKnown RBP6.97□□□□□ -1.29
USP3-216ENST00000559873 LINC00588Q9Y4M8 146 aa6.97□□□□□ -1.29
USP3-216ENST00000559873 KMT2CQ8NEZ4 4911 aaKnown RBP6.96□□□□□ -1.29
USP3-216ENST00000559873 TRAV8-6A0A0B4J262 113 aa6.96□□□□□ -1.3
USP3-216ENST00000559873 RAB4AP20338 218 aa6.96□□□□□ -1.3
USP3-216ENST00000559873 COX19Q49B96 90 aa6.96□□□□□ -1.3
USP3-216ENST00000559873 OR10J3Q5JRS4 329 aa6.96□□□□□ -1.3
USP3-216ENST00000559873 LELP1Q5T871 98 aa6.96□□□□□ -1.3
USP3-216ENST00000559873 FAM104BQ5XKR9 115 aa6.96□□□□□ -1.3
USP3-216ENST00000559873 AMN1Q8IY45 258 aa6.96□□□□□ -1.3
USP3-216ENST00000559873 GATD1Q8NB37 220 aa6.96□□□□□ -1.3
USP3-216ENST00000559873 LYSTQ99698 3801 aa6.95□□□□□ -1.3
USP3-216ENST00000559873 TRAV26-2A0A0B4J265 109 aa6.95□□□□□ -1.3
USP3-216ENST00000559873 TTC32Q5I0X7 151 aa6.95□□□□□ -1.3
USP3-216ENST00000559873 URGCP-MRPS24S4R325 110 aa6.95□□□□□ -1.3
USP3-216ENST00000559873 DNAH1Q9P2D7 4330 aa6.95□□□□□ -1.3
USP3-216ENST00000559873 SIVA1O15304 175 aa6.94□□□□□ -1.3
USP3-216ENST00000559873 PPBPP02775 128 aa6.94□□□□□ -1.3
USP3-216ENST00000559873 CKS2P33552 79 aa6.94□□□□□ -1.3
USP3-216ENST00000559873 PKIAP61925 76 aa6.94□□□□□ -1.3
USP3-216ENST00000559873 RNF185Q96GF1 192 aa6.94□□□□□ -1.3
USP3-216ENST00000559873 ST20Q9HBF5 79 aa6.94□□□□□ -1.3
USP3-216ENST00000559873 SACSQ9NZJ4 4579 aa6.93□□□□□ -1.3
USP3-216ENST00000559873 TRAV9-2A0A087WT02 112 aa6.93□□□□□ -1.3
USP3-216ENST00000559873 TRBV6-5A0A0K0K1A5 114 aa6.93□□□□□ -1.3
USP3-216ENST00000559873 K7EP13 123 aa6.93□□□□□ -1.3
USP3-216ENST00000559873 HLA-DQA1P01909 254 aa6.93□□□□□ -1.3
USP3-216ENST00000559873 MT-ND6P03923 174 aa6.93□□□□□ -1.3
USP3-216ENST00000559873 MRPL51Q4U2R6 128 aaKnown RBP6.93□□□□□ -1.3
USP3-216ENST00000559873 ORMDL3Q8N138 153 aa6.93□□□□□ -1.3
USP3-216ENST00000559873 RPL39LQ96EH5 51 aaKnown RBP6.93□□□□□ -1.3
USP3-216ENST00000559873 Q9H8V8 135 aa6.93□□□□□ -1.3
USP3-216ENST00000559873 TRBV25-1A0A075B6N4 114 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 TRBV6-8A0A0A6YYG3 113 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 IGHV3-38A0A0C4DH36 116 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 SDHAF1A6NFY7 115 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 D6R8Y8 96 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 NCR2O95944 276 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 COTL1Q14019 142 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 C10orf126Q8N4M7 172 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 Q9UF83 564 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 LAMTOR2Q9Y2Q5 125 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 RYR2Q92736 4967 aa6.92□□□□□ -1.3
USP3-216ENST00000559873 IGHV1-24A0A0C4DH33 117 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 NBDYA0A0U1RRE5 68 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 I3L3M4 83 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 PHOX2AO14813 284 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 SUMO2P61956 95 aaKnown RBP6.91□□□□□ -1.3
USP3-216ENST00000559873 WFDC10BQ8IUB3 73 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 C20orf78Q9BR46 151 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 CHCHD7Q9BUK0 85 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 GNB1LQ9BYB4 327 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 SMCO4Q9NRQ5 59 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 VPS13DQ5THJ4 4388 aa6.91□□□□□ -1.3
USP3-216ENST00000559873 DNAH6Q9C0G6 4158 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 IGLV2-18A0A075B6J9 118 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 TRBV24-1A0A075B6N3 115 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 SMKR1H3BMG3 65 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 UBE2L6O14933 153 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 TCAPO15273 167 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 APCSP02743 223 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 DNAH10OSP0CZ25 163 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 PMCHP20382 165 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 RPS10P46783 165 aaKnown RBP6.9□□□□□ -1.3
USP3-216ENST00000559873 AMTP48728 403 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 ELOBQ15370 118 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 LINC01556Q5JQF7 62 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 TMEM136Q6ZRR5 245 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 PRELID3AQ96N28 172 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 CHCHD5Q9BSY4 110 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 TMEM70Q9BUB7 260 aa6.9□□□□□ -1.3
USP3-216ENST00000559873 A0A087WX48 190 aa6.89□□□□□ -1.31
USP3-216ENST00000559873 TRBV27A0A0K0K1C4 114 aa6.89□□□□□ -1.31
USP3-216ENST00000559873 VCYO14598 125 aa6.89□□□□□ -1.31
USP3-216ENST00000559873 TNFRSF6BO95407 300 aa6.89□□□□□ -1.31
USP3-216ENST00000559873 BTF3P20290 206 aaKnown RBP6.89□□□□□ -1.31
USP3-216ENST00000559873 FCER1GP30273 86 aa6.89□□□□□ -1.31
USP3-216ENST00000559873 IQCJQ1A5X6 159 aa6.89□□□□□ -1.31
USP3-216ENST00000559873 NRACQ8N912 160 aa6.89□□□□□ -1.31
USP3-216ENST00000559873 KIR2DL4Q99706 377 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 63 ms