RNA–Protein interactions for RNA: ENST00000557678.1

GPHN-216, Transcript of gephyrin, humanhuman

TSL 3

Gene GPHN, Length 592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-216ENST00000557678 KNTC1P50748 2209 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 CORTO00230 105 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 SNAPC5O75971 98 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 CCL3L1P16619 93 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 S100PP25815 95 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 C8orf59Q8N0T1 100 aaPredicted RBP0.67□□□□□ -2.3
GPHN-216ENST00000557678 LINC00208Q96KT6 92 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 TCEAL7Q9BRU2 100 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 SCN3BQ9NY72 215 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 SCP2D1Q9UJQ7 156 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 IER3IP1Q9Y5U9 82 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 ZDBF2Q9HCK1 2354 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 PXDNQ92626 1479 aa0.67□□□□□ -2.3
GPHN-216ENST00000557678 TENM3Q9P273 2699 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 RBBP6Q7Z6E9 1792 aaKnown RBP0.66□□□□□ -2.3
GPHN-216ENST00000557678 TRBV7-1A0A0A6YYK4 115 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 LOC100130705A0A1B0GUX0 176 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 K7EIL1 84 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 TFF1P04155 84 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 S100A1P23297 94 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 UBE2D1P51668 147 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 KRTAP10-4P60372 401 aaPredicted RBP0.66□□□□□ -2.3
GPHN-216ENST00000557678 NPC2P61916 151 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 PPP3R1P63098 170 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 CATR1Q13166 79 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 S100A7L2Q5SY68 101 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 MRPL54Q6P161 138 aaKnown RBP0.66□□□□□ -2.3
GPHN-216ENST00000557678 C20orf197Q8N268 126 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 Q8N6K4 173 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 COX7B2Q8TF08 81 aa0.66□□□□□ -2.3
GPHN-216ENST00000557678 SIPA1L3O60292 1781 aaPredicted RBP0.65□□□□□ -2.3
GPHN-216ENST00000557678 TNS1Q9HBL0 1735 aaKnown RBP0.65□□□□□ -2.31
GPHN-216ENST00000557678 TRAV13-2A0A0B4J235 113 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 SPAARA0A1B0GVQ0 90 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 C20orf202A1L168 122 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 SSSCA1O60232 199 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 SIX6O95475 246 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 SPINT3P49223 89 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 ATP5EP56381 51 aaPredicted RBP0.65□□□□□ -2.31
GPHN-216ENST00000557678 C9orf153Q5TBE3 101 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 Q8N8P6 123 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 SPTSSBQ8NFR3 76 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 C10orf82Q8WW14 230 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 PLAC4Q8WY50 150 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 LSM10Q969L4 123 aaKnown RBP0.65□□□□□ -2.31
GPHN-216ENST00000557678 AQP10Q96PS8 301 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 V9GYV3 84 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 ARFGEF1Q9Y6D6 1849 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 MED13LQ71F56 2210 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 LOC285556D6RIA3 1793 aa0.65□□□□□ -2.31
GPHN-216ENST00000557678 CPSF1Q10570 1443 aaKnown RBP0.64□□□□□ -2.31
GPHN-216ENST00000557678 CASKIN1Q8WXD9 1431 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 F2Z2F3 143 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 SMIM6P0DI80 62 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 ELOF1P60002 83 aaKnown RBP0.64□□□□□ -2.31
GPHN-216ENST00000557678 RPL37P61927 97 aaKnown RBP0.64□□□□□ -2.31
GPHN-216ENST00000557678 SPINK9Q5DT21 86 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 GTF2H5Q6ZYL4 71 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 SVBPQ8N300 66 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 ABCA1O95477 2261 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 PI4KAP42356 2102 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 ARAP2Q8WZ64 1704 aa0.64□□□□□ -2.31
GPHN-216ENST00000557678 DOCK1Q14185 1865 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 PZPP20742 1482 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 A0A096LNT2 108 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 UBE2L5PA0A1B0GUS4 154 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 FAM24AA6NFZ4 105 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 HCG22E2RYF7 251 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 EDDM3BP56851 147 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 UBE2L3P68036 154 aaKnown RBP0.63□□□□□ -2.31
GPHN-216ENST00000557678 RBM3P98179 157 aaKnown RBP0.63□□□□□ -2.31
GPHN-216ENST00000557678 C5orf38Q86SI9 138 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 BPESC1Q9GZL8 116 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 CYP4F30PQ9H0H9 118 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 PRDM2Q13029 1718 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 CDK13Q14004 1512 aaKnown RBP0.63□□□□□ -2.31
GPHN-216ENST00000557678 PPIP5K1Q6PFW1 1433 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 TANC1Q9C0D5 1861 aa0.63□□□□□ -2.31
GPHN-216ENST00000557678 MRC2Q9UBG0 1479 aa0.62□□□□□ -2.31
GPHN-216ENST00000557678 IFITM1P13164 125 aa0.62□□□□□ -2.31
GPHN-216ENST00000557678 ZNF137PP52743 207 aa0.62□□□□□ -2.31
GPHN-216ENST00000557678 INSL4Q14641 139 aa0.62□□□□□ -2.31
GPHN-216ENST00000557678 COMMD6Q7Z4G1 85 aa0.62□□□□□ -2.31
GPHN-216ENST00000557678 MYOZ3Q8TDC0 251 aa0.62□□□□□ -2.31
GPHN-216ENST00000557678 C12orf57Q99622 126 aa0.62□□□□□ -2.31
GPHN-216ENST00000557678 SHROOM2Q13796 1616 aa0.62□□□□□ -2.31
GPHN-216ENST00000557678 SPHKAPQ2M3C7 1700 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 ZFYVE16Q7Z3T8 1539 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 A0A087WTM6 91 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 OOSP1A8MZH6 123 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 LY6G6CO95867 125 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 DCDP81605 110 aaKnown RBP0.61□□□□□ -2.31
GPHN-216ENST00000557678 C6orf52Q5T4I8 152 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 SMIM11BQ8TCY0 68 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 LENEPQ9Y5L5 61 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 LINC00312Q9Y6C7 94 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 ROBO1Q9Y6N7 1651 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 F5P12259 2224 aa0.61□□□□□ -2.31
GPHN-216ENST00000557678 LAMC3Q9Y6N6 1575 aa0.61□□□□□ -2.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms