RNA–Protein interactions for RNA: ENST00000557678.1

GPHN-216, Transcript of gephyrin, humanhuman

TSL 3

Gene GPHN, Length 592 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-216ENST00000557678 AEBP2Q6ZN18 517 aaPredicted RBP20.46■□□□□ 0.87
GPHN-216ENST00000557678 CHIC1Q5VXU3 224 aa18.78■□□□□ 0.6
GPHN-216ENST00000557678 SENP3Q9H4L4 574 aaPredicted RBP17.23■□□□□ 0.35
GPHN-216ENST00000557678 PHF23Q9BUL5 403 aaPredicted RBP17.05■□□□□ 0.32
GPHN-216ENST00000557678 FOXD1Q16676 465 aa16.31■□□□□ 0.2
GPHN-216ENST00000557678 POTEDQ86YR6 584 aa15.91■□□□□ 0.14
GPHN-216ENST00000557678 MSH5O43196 834 aa15.22■□□□□ 0.03
GPHN-216ENST00000557678 PIAS4Q8N2W9 510 aaPredicted RBP15.05■□□□□ -0
GPHN-216ENST00000557678 PLPPR3Q6T4P5 718 aa15.04■□□□□ -0
GPHN-216ENST00000557678 PPP6R1Q9UPN7 881 aa14.97□□□□□ -0.01
GPHN-216ENST00000557678 ADRA2BP18089 450 aa14.85□□□□□ -0.03
GPHN-216ENST00000557678 MAPK8IP2Q13387 824 aaPredicted RBP13.83□□□□□ -0.2
GPHN-216ENST00000557678 DMRT2Q9Y5R5 561 aa13.66□□□□□ -0.22
GPHN-216ENST00000557678 CACNB1Q02641 598 aaPredicted RBP13.44□□□□□ -0.26
GPHN-216ENST00000557678 SCAF1Q9H7N4 1312 aaKnown RBP13.39□□□□□ -0.27
GPHN-216ENST00000557678 PPP4R3CPQ6ZMV5 832 aa13.21□□□□□ -0.29
GPHN-216ENST00000557678 DCAF8L1A6NGE4 600 aa13.14□□□□□ -0.31
GPHN-216ENST00000557678 RNF39Q9H2S5 420 aa13.08□□□□□ -0.32
GPHN-216ENST00000557678 HOXD11P31277 338 aaPredicted RBP12.95□□□□□ -0.34
GPHN-216ENST00000557678 CNKSR2Q8WXI2 1034 aa12.91□□□□□ -0.34
GPHN-216ENST00000557678 NCBP3Q53F19 620 aaKnown RBP12.79□□□□□ -0.36
GPHN-216ENST00000557678 RNF216Q9NWF9 866 aaPredicted RBP12.73□□□□□ -0.37
GPHN-216ENST00000557678 C1QBPQ07021 282 aaKnown RBP12.72□□□□□ -0.37
GPHN-216ENST00000557678 NPM3O75607 178 aaKnown RBP12.55□□□□□ -0.4
GPHN-216ENST00000557678 KCNA4P22459 653 aa12.47□□□□□ -0.41
GPHN-216ENST00000557678 DNAJC5BQ9UF47 199 aa12.41□□□□□ -0.42
GPHN-216ENST00000557678 POTEHQ6S545 545 aa12.31□□□□□ -0.44
GPHN-216ENST00000557678 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.3□□□□□ -0.44
GPHN-216ENST00000557678 SPINK5Q9NQ38 1064 aaPredicted RBP12.16□□□□□ -0.46
GPHN-216ENST00000557678 U3KPZ7 1027 aaPredicted RBP12.14□□□□□ -0.47
GPHN-216ENST00000557678 DSG3P32926 999 aa12.11□□□□□ -0.47
GPHN-216ENST00000557678 CAPN15O75808 1086 aa12.01□□□□□ -0.49
GPHN-216ENST00000557678 SLC4A2P04920 1241 aa11.9□□□□□ -0.5
GPHN-216ENST00000557678 SLC4A1APQ9BWU0 796 aaKnown RBP11.86□□□□□ -0.51
GPHN-216ENST00000557678 ABCB7O75027 752 aa11.82□□□□□ -0.52
GPHN-216ENST00000557678 TRHP20396 242 aaPredicted RBP11.74□□□□□ -0.53
GPHN-216ENST00000557678 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.72□□□□□ -0.53
GPHN-216ENST00000557678 HNRNPUL2Q1KMD3 747 aaKnown RBP11.72□□□□□ -0.53
GPHN-216ENST00000557678 APLP2Q06481 763 aa11.71□□□□□ -0.53
GPHN-216ENST00000557678 SAMD1Q6SPF0 538 aaPredicted RBP11.65□□□□□ -0.54
GPHN-216ENST00000557678 MYCNP04198 464 aaPredicted RBP11.62□□□□□ -0.55
GPHN-216ENST00000557678 FOXD4L1Q9NU39 408 aa11.6□□□□□ -0.55
GPHN-216ENST00000557678 ZNF219Q9P2Y4 722 aaPredicted RBP11.58□□□□□ -0.56
GPHN-216ENST00000557678 CHRDL2Q6WN34 429 aa11.46□□□□□ -0.57
GPHN-216ENST00000557678 ZBTB22O15209 634 aa11.42□□□□□ -0.58
GPHN-216ENST00000557678 RBM42Q9BTD8 480 aaKnown RBP11.34□□□□□ -0.59
GPHN-216ENST00000557678 POLA2Q14181 598 aa11.33□□□□□ -0.6
GPHN-216ENST00000557678 ATF5Q9Y2D1 282 aaPredicted RBP11.32□□□□□ -0.6
GPHN-216ENST00000557678 SP7Q8TDD2 431 aaPredicted RBP11.29□□□□□ -0.6
GPHN-216ENST00000557678 ATXN8OSP0DMR3 200 aa11.18□□□□□ -0.62
GPHN-216ENST00000557678 EHMT2Q96KQ7 1210 aa11.16□□□□□ -0.62
GPHN-216ENST00000557678 PIP4P2Q8N4L2 257 aa11.15□□□□□ -0.62
GPHN-216ENST00000557678 ZBTB12Q9Y330 459 aaPredicted RBP11.1□□□□□ -0.63
GPHN-216ENST00000557678 CSRNP3Q8WYN3 585 aa11.08□□□□□ -0.64
GPHN-216ENST00000557678 REM2Q8IYK8 340 aaPredicted RBP11.06□□□□□ -0.64
GPHN-216ENST00000557678 EVX2Q03828 476 aa11.05□□□□□ -0.64
GPHN-216ENST00000557678 OSCARQ8IYS5 282 aa11.05□□□□□ -0.64
GPHN-216ENST00000557678 AKT1S1Q96B36 256 aa11.05□□□□□ -0.64
GPHN-216ENST00000557678 PITPNM1O00562 1244 aa11.01□□□□□ -0.65
GPHN-216ENST00000557678 HAX1O00165 279 aa10.98□□□□□ -0.65
GPHN-216ENST00000557678 FBLN2P98095 1184 aa10.96□□□□□ -0.65
GPHN-216ENST00000557678 FXR2P51116 673 aaKnown RBP eCLIP10.94□□□□□ -0.66
GPHN-216ENST00000557678 MKRN4PQ13434 485 aaPredicted RBP10.78□□□□□ -0.68
GPHN-216ENST00000557678 SPDYE2BA6NHP3 402 aa10.75□□□□□ -0.69
GPHN-216ENST00000557678 SPDYE6P0CI01 402 aa10.75□□□□□ -0.69
GPHN-216ENST00000557678 SPDYE2Q495Y8 402 aa10.75□□□□□ -0.69
GPHN-216ENST00000557678 ZNF692Q9BU19 519 aaPredicted RBP10.72□□□□□ -0.69
GPHN-216ENST00000557678 PRKAR2AP13861 404 aaKnown RBP10.66□□□□□ -0.7
GPHN-216ENST00000557678 C19orf67A6NJJ6 358 aa10.62□□□□□ -0.71
GPHN-216ENST00000557678 CLEC11AQ9Y240 323 aa10.61□□□□□ -0.71
GPHN-216ENST00000557678 GABBR2O75899 941 aa10.6□□□□□ -0.71
GPHN-216ENST00000557678 SSUH2Q9Y2M2 353 aa10.58□□□□□ -0.72
GPHN-216ENST00000557678 LHX8Q68G74 356 aa10.57□□□□□ -0.72
GPHN-216ENST00000557678 SPDYE1Q8NFV5 336 aaPredicted RBP10.56□□□□□ -0.72
GPHN-216ENST00000557678 CHADLQ6NUI6 762 aa10.55□□□□□ -0.72
GPHN-216ENST00000557678 PABPN1Q86U42 306 aaKnown RBP eCLIP10.55□□□□□ -0.72
GPHN-216ENST00000557678 POTEIP0CG38 1075 aa10.5□□□□□ -0.73
GPHN-216ENST00000557678 SPDYE4A6NLX3 237 aa10.44□□□□□ -0.74
GPHN-216ENST00000557678 PRR29P0C7W0 189 aa10.42□□□□□ -0.74
GPHN-216ENST00000557678 PLSCR2Q9NRY7 297 aa10.36□□□□□ -0.75
GPHN-216ENST00000557678 CD44P16070 742 aaKnown RBP10.28□□□□□ -0.76
GPHN-216ENST00000557678 STAG3Q9UJ98 1225 aa10.28□□□□□ -0.76
GPHN-216ENST00000557678 FARP1Q9Y4F1 1045 aaPredicted RBP10.21□□□□□ -0.77
GPHN-216ENST00000557678 POTEB2H3BUK9 544 aa10.17□□□□□ -0.78
GPHN-216ENST00000557678 OTUD5Q96G74 571 aa10.14□□□□□ -0.79
GPHN-216ENST00000557678 FKBP8Q14318 412 aa10.13□□□□□ -0.79
GPHN-216ENST00000557678 GALR2O43603 387 aaPredicted RBP10.12□□□□□ -0.79
GPHN-216ENST00000557678 CREBZFQ9NS37 354 aa10.12□□□□□ -0.79
GPHN-216ENST00000557678 DCBLD2Q96PD2 775 aa10.09□□□□□ -0.79
GPHN-216ENST00000557678 PROM2Q8N271 834 aa10.07□□□□□ -0.8
GPHN-216ENST00000557678 ZNF579Q8NAF0 562 aaKnown RBP10.07□□□□□ -0.8
GPHN-216ENST00000557678 ZRANB1Q9UGI0 708 aa10.05□□□□□ -0.8
GPHN-216ENST00000557678 POTEMA6NI47 508 aa10.02□□□□□ -0.81
GPHN-216ENST00000557678 NPM1P06748 294 aaKnown RBP eCLIP10.02□□□□□ -0.81
GPHN-216ENST00000557678 PELP1Q8IZL8 1130 aaKnown RBP10.01□□□□□ -0.81
GPHN-216ENST00000557678 PLEKHG5O94827 1062 aa10□□□□□ -0.81
GPHN-216ENST00000557678 PHF12Q96QT6 1004 aa10□□□□□ -0.81
GPHN-216ENST00000557678 MIER1Q8N108 512 aa9.99□□□□□ -0.81
GPHN-216ENST00000557678 PAK3O75914 559 aaPredicted RBP9.98□□□□□ -0.81
GPHN-216ENST00000557678 POTEGQ6S5H5 508 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms