RNA–Protein interactions for RNA: ENST00000557307.1

SYNE2-227, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 526 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-227ENST00000557307 TOR2AQ5JU69 321 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 CLPSL2Q6UWE3 100 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 C15orf54Q8N8G6 183 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 DEFB104AQ8WTQ1 72 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 C11orf52Q96A22 123 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 URGCP-MRPS24S4R325 110 aa7.11□□□□□ -1.27
SYNE2-227ENST00000557307 A0A087WX48 190 aa7.1□□□□□ -1.27
SYNE2-227ENST00000557307 IGLC6P0CF74 106 aa7.1□□□□□ -1.27
SYNE2-227ENST00000557307 SPANXN1Q5VSR9 72 aa7.1□□□□□ -1.27
SYNE2-227ENST00000557307 KRTAP26-1Q6PEX3 210 aa7.1□□□□□ -1.27
SYNE2-227ENST00000557307 HMCN2Q8NDA2 5059 aa7.09□□□□□ -1.27
SYNE2-227ENST00000557307 C19orf71A6NCJ1 209 aa7.09□□□□□ -1.27
SYNE2-227ENST00000557307 TMEM262E9PQX1 116 aa7.09□□□□□ -1.27
SYNE2-227ENST00000557307 S100A9P06702 114 aaKnown RBP7.09□□□□□ -1.27
SYNE2-227ENST00000557307 GAGE6Q13070 117 aa7.09□□□□□ -1.27
SYNE2-227ENST00000557307 CHCHD7Q9BUK0 85 aa7.09□□□□□ -1.27
SYNE2-227ENST00000557307 F5H697 171 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 HLA-DQA1P01909 254 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 MGPP08493 103 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 SUMO4Q6EEV6 95 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 CIRBP-AS1Q8TBR5 109 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 CHCHD5Q9BSY4 110 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 TPPP3Q9BW30 176 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 GFRA4Q9GZZ7 299 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 VAX2Q9UIW0 290 aa7.08□□□□□ -1.28
SYNE2-227ENST00000557307 USP17L23D6RBM5 183 aa7.07□□□□□ -1.28
SYNE2-227ENST00000557307 PANO1I0J062 215 aa7.07□□□□□ -1.28
SYNE2-227ENST00000557307 ANGP03950 147 aaKnown RBP7.07□□□□□ -1.28
SYNE2-227ENST00000557307 RBX1P62877 108 aa7.07□□□□□ -1.28
SYNE2-227ENST00000557307 OR2D3Q8NGH3 330 aa7.07□□□□□ -1.28
SYNE2-227ENST00000557307 RMI2Q96E14 147 aa7.07□□□□□ -1.28
SYNE2-227ENST00000557307 AP1S3Q96PC3 154 aa7.07□□□□□ -1.28
SYNE2-227ENST00000557307 MANBALQ9NQG1 85 aa7.07□□□□□ -1.28
SYNE2-227ENST00000557307 COX11Q9Y6N1 276 aa7.07□□□□□ -1.28
SYNE2-227ENST00000557307 TRAV1-1A0A0B4J248 108 aa7.06□□□□□ -1.28
SYNE2-227ENST00000557307 M0QY20 66 aa7.06□□□□□ -1.28
SYNE2-227ENST00000557307 CRPP02741 224 aa7.06□□□□□ -1.28
SYNE2-227ENST00000557307 PRSS1P07477 247 aa7.06□□□□□ -1.28
SYNE2-227ENST00000557307 SULT1A2P50226 295 aa7.06□□□□□ -1.28
SYNE2-227ENST00000557307 FER1L6-AS1Q8NA97 138 aa7.06□□□□□ -1.28
SYNE2-227ENST00000557307 CHAC1Q9BUX1 264 aa7.06□□□□□ -1.28
SYNE2-227ENST00000557307 C1orf43Q9BWL3 253 aa7.06□□□□□ -1.28
SYNE2-227ENST00000557307 HNRNPA3P51991 378 aaKnown RBP7.05□□□□□ -1.28
SYNE2-227ENST00000557307 NKX2-5P52952 324 aaPredicted RBP7.05□□□□□ -1.28
SYNE2-227ENST00000557307 MEF2BQ02080 365 aaPredicted RBP7.05□□□□□ -1.28
SYNE2-227ENST00000557307 Q0VG73 95 aa7.05□□□□□ -1.28
SYNE2-227ENST00000557307 ELOBQ15370 118 aa7.05□□□□□ -1.28
SYNE2-227ENST00000557307 LINC00269Q8N2A0 174 aa7.05□□□□□ -1.28
SYNE2-227ENST00000557307 C20orf203Q8NBC4 194 aa7.05□□□□□ -1.28
SYNE2-227ENST00000557307 PRR34Q9NV39 138 aa7.05□□□□□ -1.28
SYNE2-227ENST00000557307 IGLV4-60A0A075B6I1 120 aa7.04□□□□□ -1.28
SYNE2-227ENST00000557307 IGLV10-54A0A075B6I4 117 aa7.04□□□□□ -1.28
SYNE2-227ENST00000557307 K7EN84 100 aa7.04□□□□□ -1.28
SYNE2-227ENST00000557307 PLA2G1BP04054 148 aaKnown RBP7.04□□□□□ -1.28
SYNE2-227ENST00000557307 BCL2P10415 239 aa7.04□□□□□ -1.28
SYNE2-227ENST00000557307 GNG4P50150 75 aa7.04□□□□□ -1.28
SYNE2-227ENST00000557307 EIF5AP63241 154 aaKnown RBP7.04□□□□□ -1.28
SYNE2-227ENST00000557307 IQCJQ1A5X6 159 aa7.04□□□□□ -1.28
SYNE2-227ENST00000557307 KCNIP4Q6PIL6 250 aa7.04□□□□□ -1.28
SYNE2-227ENST00000557307 LYZL1Q6UWQ5 148 aa7.04□□□□□ -1.28
SYNE2-227ENST00000557307 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.04□□□□□ -1.28
SYNE2-227ENST00000557307 SMIM17P0DL12 118 aa7.03□□□□□ -1.28
SYNE2-227ENST00000557307 TCTE3Q8IZS6 198 aa7.03□□□□□ -1.28
SYNE2-227ENST00000557307 NUDT10Q8NFP7 164 aa7.03□□□□□ -1.28
SYNE2-227ENST00000557307 NUDT11Q96G61 164 aa7.03□□□□□ -1.28
SYNE2-227ENST00000557307 RNASE7Q9H1E1 156 aaKnown RBP7.03□□□□□ -1.28
SYNE2-227ENST00000557307 MED9Q9NWA0 146 aa7.03□□□□□ -1.28
SYNE2-227ENST00000557307 TRBV25-1A0A075B6N4 114 aa7.02□□□□□ -1.29
SYNE2-227ENST00000557307 TRAV26-2A0A0B4J265 109 aa7.02□□□□□ -1.29
SYNE2-227ENST00000557307 IGHV1-24A0A0C4DH33 117 aa7.02□□□□□ -1.29
SYNE2-227ENST00000557307 P01737 135 aa7.02□□□□□ -1.29
SYNE2-227ENST00000557307 NTF3P20783 257 aa7.02□□□□□ -1.29
SYNE2-227ENST00000557307 FOXA3P55318 350 aaPredicted RBP7.02□□□□□ -1.29
SYNE2-227ENST00000557307 MIAQ16674 131 aa7.02□□□□□ -1.29
SYNE2-227ENST00000557307 KRTAP29-1A8MX34 341 aaPredicted RBP7.01□□□□□ -1.29
SYNE2-227ENST00000557307 J3QL48 77 aa7.01□□□□□ -1.29
SYNE2-227ENST00000557307 SLPIP03973 132 aa7.01□□□□□ -1.29
SYNE2-227ENST00000557307 CTRLP40313 264 aa7.01□□□□□ -1.29
SYNE2-227ENST00000557307 RAB5CP51148 216 aa7.01□□□□□ -1.29
SYNE2-227ENST00000557307 RPS20P60866 119 aaKnown RBP7.01□□□□□ -1.29
SYNE2-227ENST00000557307 REG3AQ06141 175 aa7.01□□□□□ -1.29
SYNE2-227ENST00000557307 RASL11AQ6T310 242 aa7.01□□□□□ -1.29
SYNE2-227ENST00000557307 GTSF1Q8WW33 167 aa7.01□□□□□ -1.29
SYNE2-227ENST00000557307 DAZAP1Q96EP5 407 aaKnown RBP7.01□□□□□ -1.29
SYNE2-227ENST00000557307 PDE6DO43924 150 aa7□□□□□ -1.29
SYNE2-227ENST00000557307 IFNA1P01562 189 aa7□□□□□ -1.29
SYNE2-227ENST00000557307 CACNG7P62955 275 aa7□□□□□ -1.29
SYNE2-227ENST00000557307 C9orf62Q8N4C0 152 aa7□□□□□ -1.29
SYNE2-227ENST00000557307 GATD1Q8NB37 220 aa7□□□□□ -1.29
SYNE2-227ENST00000557307 OCC1Q8TAD7 63 aa7□□□□□ -1.29
SYNE2-227ENST00000557307 RPL39LQ96EH5 51 aaKnown RBP7□□□□□ -1.29
SYNE2-227ENST00000557307 SMIM12Q96EX1 92 aa7□□□□□ -1.29
SYNE2-227ENST00000557307 DPH3P1Q9H4G8 78 aa7□□□□□ -1.29
SYNE2-227ENST00000557307 hCG_2014768A0A024R1R8 64 aa6.99□□□□□ -1.29
SYNE2-227ENST00000557307 GAS8-AS1O95177 125 aa6.99□□□□□ -1.29
SYNE2-227ENST00000557307 C14orf177Q52M58 125 aa6.99□□□□□ -1.29
SYNE2-227ENST00000557307 TMEM97Q5BJF2 176 aa6.99□□□□□ -1.29
SYNE2-227ENST00000557307 Q6ZNX1 250 aa6.99□□□□□ -1.29
SYNE2-227ENST00000557307 SLC51BQ86UW2 128 aa6.99□□□□□ -1.29
SYNE2-227ENST00000557307 C9orf163Q8N9P6 203 aa6.99□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms