RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 RAB4AP20338 218 aa11.88□□□□□ -0.51
LIG1-204ENST00000542460 GAGE1Q13065 139 aa11.88□□□□□ -0.51
LIG1-204ENST00000542460 GAGE4Q13068 117 aa11.88□□□□□ -0.51
LIG1-204ENST00000542460 GAGE5Q13069 117 aa11.88□□□□□ -0.51
LIG1-204ENST00000542460 GAGE13Q4V321 117 aa11.88□□□□□ -0.51
LIG1-204ENST00000542460 FAM104BQ5XKR9 115 aa11.88□□□□□ -0.51
LIG1-204ENST00000542460 RASL11AQ6T310 242 aa11.88□□□□□ -0.51
LIG1-204ENST00000542460 AMN1Q8IY45 258 aa11.88□□□□□ -0.51
LIG1-204ENST00000542460 RPL36AP83881 106 aaKnown RBP11.87□□□□□ -0.51
LIG1-204ENST00000542460 NEXN-AS1Q8NBZ9 246 aa11.87□□□□□ -0.51
LIG1-204ENST00000542460 RPL36ALQ969Q0 106 aaKnown RBP11.87□□□□□ -0.51
LIG1-204ENST00000542460 RNF185Q96GF1 192 aa11.87□□□□□ -0.51
LIG1-204ENST00000542460 TRBV7-3A0A075B6L6 115 aa11.86□□□□□ -0.51
LIG1-204ENST00000542460 TRAV26-2A0A0B4J265 109 aa11.86□□□□□ -0.51
LIG1-204ENST00000542460 ZNRF2Q8NHG8 242 aa11.86□□□□□ -0.51
LIG1-204ENST00000542460 LINC00694P0DN24 101 aa11.86□□□□□ -0.51
LIG1-204ENST00000542460 CCL18P55774 89 aa11.86□□□□□ -0.51
LIG1-204ENST00000542460 MRAP2Q96G30 205 aa11.86□□□□□ -0.51
LIG1-204ENST00000542460 DNAJC30Q96LL9 226 aa11.86□□□□□ -0.51
LIG1-204ENST00000542460 NIT2Q9NQR4 276 aa11.86□□□□□ -0.51
LIG1-204ENST00000542460 PLECQ15149 4684 aaKnown RBP11.85□□□□□ -0.51
LIG1-204ENST00000542460 LGALS9CQ6DKI2 356 aa11.85□□□□□ -0.51
LIG1-204ENST00000542460 ATP6V0E2Q8NHE4 81 aa11.85□□□□□ -0.51
LIG1-204ENST00000542460 TNFRSF18Q9Y5U5 241 aa11.85□□□□□ -0.51
LIG1-204ENST00000542460 UBE2D3P61077 147 aa11.84□□□□□ -0.51
LIG1-204ENST00000542460 UBE2D2P62837 147 aa11.84□□□□□ -0.51
LIG1-204ENST00000542460 ELOBQ15370 118 aa11.84□□□□□ -0.51
LIG1-204ENST00000542460 ESRGQ1W209 222 aa11.84□□□□□ -0.51
LIG1-204ENST00000542460 MRPL51Q4U2R6 128 aaKnown RBP11.84□□□□□ -0.51
LIG1-204ENST00000542460 LYPD5Q6UWN5 251 aa11.84□□□□□ -0.51
LIG1-204ENST00000542460 COLCA2A8K830 154 aa11.82□□□□□ -0.52
LIG1-204ENST00000542460 COX19Q49B96 90 aa11.82□□□□□ -0.52
LIG1-204ENST00000542460 UBE2DNLQ8IWF7 75 aa11.82□□□□□ -0.52
LIG1-204ENST00000542460 GTSF1LQ9H1H1 148 aa11.82□□□□□ -0.52
LIG1-204ENST00000542460 TRBV24-1A0A075B6N3 115 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 TGIF2-C20orf24A0A0A6YYL0 155 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 LOC105371267A0A1B0GV96 52 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 PPP1R17O96001 155 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 TIRAPP58753 221 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 TMEM136Q6ZRR5 245 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 LINC00476Q8WZB0 136 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 RPL39LQ96EH5 51 aaKnown RBP11.81□□□□□ -0.52
LIG1-204ENST00000542460 GNB1LQ9BYB4 327 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 LINC00588Q9Y4M8 146 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 GAS8-AS1O95177 125 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 PPBPP02775 128 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 CKS2P33552 79 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 OR10J3Q5JRS4 329 aa11.81□□□□□ -0.52
LIG1-204ENST00000542460 DAZ4Q86SG3 579 aaKnown RBP11.81□□□□□ -0.52
LIG1-204ENST00000542460 DAZ3Q9NR90 486 aaKnown RBP11.81□□□□□ -0.52
LIG1-204ENST00000542460 TRBV6-5A0A0K0K1A5 114 aa11.8□□□□□ -0.52
LIG1-204ENST00000542460 SMKR1H3BMG3 65 aa11.8□□□□□ -0.52
LIG1-204ENST00000542460 LY6G6CO95867 125 aa11.8□□□□□ -0.52
LIG1-204ENST00000542460 NCR2O95944 276 aa11.8□□□□□ -0.52
LIG1-204ENST00000542460 LCE6AA0A183 80 aa11.79□□□□□ -0.52
LIG1-204ENST00000542460 HLA-DQA1P01909 254 aa11.79□□□□□ -0.52
LIG1-204ENST00000542460 RPS10P46783 165 aaKnown RBP11.79□□□□□ -0.52
LIG1-204ENST00000542460 YPEL4Q96NS1 127 aa11.79□□□□□ -0.52
LIG1-204ENST00000542460 MRPS16Q9Y3D3 137 aaKnown RBP11.79□□□□□ -0.52
LIG1-204ENST00000542460 D6R8Y8 96 aa11.78□□□□□ -0.52
LIG1-204ENST00000542460 MT-ND6P03923 174 aa11.78□□□□□ -0.52
LIG1-204ENST00000542460 ORMDL3Q8N138 153 aa11.78□□□□□ -0.52
LIG1-204ENST00000542460 NRACQ8N912 160 aa11.78□□□□□ -0.52
LIG1-204ENST00000542460 ST20Q9HBF5 79 aa11.78□□□□□ -0.52
LIG1-204ENST00000542460 IGHV3-38A0A0C4DH36 116 aa11.77□□□□□ -0.52
LIG1-204ENST00000542460 SDHAF1A6NFY7 115 aa11.77□□□□□ -0.52
LIG1-204ENST00000542460 RAB5AP20339 215 aa11.77□□□□□ -0.52
LIG1-204ENST00000542460 UPK3BQ9BT76 320 aa11.77□□□□□ -0.52
LIG1-204ENST00000542460 C1orf196B1AJZ1 125 aa11.76□□□□□ -0.53
LIG1-204ENST00000542460 APCSP02743 223 aa11.76□□□□□ -0.53
LIG1-204ENST00000542460 RAB5BP61020 215 aa11.76□□□□□ -0.53
LIG1-204ENST00000542460 TMEM97Q5BJF2 176 aa11.76□□□□□ -0.53
LIG1-204ENST00000542460 LELP1Q5T871 98 aa11.76□□□□□ -0.53
LIG1-204ENST00000542460 HYDINQ4G0P3 5121 aa11.76□□□□□ -0.53
LIG1-204ENST00000542460 TNFRSF6BO95407 300 aa11.76□□□□□ -0.53
LIG1-204ENST00000542460 PRELID3AQ96N28 172 aa11.76□□□□□ -0.53
LIG1-204ENST00000542460 TRAV8-6A0A0B4J262 113 aa11.75□□□□□ -0.53
LIG1-204ENST00000542460 PHOX2AO14813 284 aa11.75□□□□□ -0.53
LIG1-204ENST00000542460 SUMO2P61956 95 aaKnown RBP11.75□□□□□ -0.53
LIG1-204ENST00000542460 C20orf78Q9BR46 151 aa11.75□□□□□ -0.53
LIG1-204ENST00000542460 TMEM70Q9BUB7 260 aa11.75□□□□□ -0.53
LIG1-204ENST00000542460 LAMTOR2Q9Y2Q5 125 aa11.75□□□□□ -0.53
LIG1-204ENST00000542460 DNAH1Q9P2D7 4330 aa11.74□□□□□ -0.53
LIG1-204ENST00000542460 TRBV6-8A0A0A6YYG3 113 aa11.74□□□□□ -0.53
LIG1-204ENST00000542460 POLR2KP53803 58 aaKnown RBP11.74□□□□□ -0.53
LIG1-204ENST00000542460 MRPL18Q9H0U6 180 aaKnown RBP11.74□□□□□ -0.53
LIG1-204ENST00000542460 I3L3M4 83 aa11.73□□□□□ -0.53
LIG1-204ENST00000542460 NPYP01303 97 aa11.73□□□□□ -0.53
LIG1-204ENST00000542460 PMCHP20382 165 aa11.73□□□□□ -0.53
LIG1-204ENST00000542460 Q9H8V8 135 aa11.73□□□□□ -0.53
LIG1-204ENST00000542460 TRBV27A0A0K0K1C4 114 aa11.72□□□□□ -0.53
LIG1-204ENST00000542460 VCYO14598 125 aa11.72□□□□□ -0.53
LIG1-204ENST00000542460 FABP9Q0Z7S8 132 aa11.72□□□□□ -0.53
LIG1-204ENST00000542460 COTL1Q14019 142 aa11.72□□□□□ -0.53
LIG1-204ENST00000542460 NTM-AS1Q6ZSK4 140 aa11.72□□□□□ -0.53
LIG1-204ENST00000542460 TRAPPC1Q9Y5R8 145 aa11.72□□□□□ -0.53
LIG1-204ENST00000542460 ALMS1Q8TCU4 4167 aa11.72□□□□□ -0.53
LIG1-204ENST00000542460 SIVA1O15304 175 aa11.71□□□□□ -0.53
LIG1-204ENST00000542460 RPL32P62910 135 aaKnown RBP11.71□□□□□ -0.53
LIG1-204ENST00000542460 KIAA1644Q3SXP7 199 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 75.6 ms