RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 KLKP1Q107X0 134 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 SPANXN1Q5VSR9 72 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 SLC48A1Q6P1K1 146 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 Q8IYB0 196 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 TMEM141Q96I45 108 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 SCGB3A1Q96QR1 104 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 NMES1Q9C002 83 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 BPESC1Q9GZL8 116 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 NEXMIFQ5QGS0 1516 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 SCN9AQ15858 1988 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 CASP8AP2Q9UKL3 1982 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 CRYBG1Q9Y4K1 1723 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 COL6A3P12111 3177 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 MYOM1P52179 1685 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 DOCK1Q14185 1865 aa1.99□□□□□ -2.09
CD44-229ENST00000528672 CABIN1Q9Y6J0 2220 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 TANC2Q9HCD6 1990 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 CPS1P31327 1500 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 ARHGEF28Q8N1W1 1705 aaKnown RBP1.98□□□□□ -2.09
CD44-229ENST00000528672 MYO18BQ8IUG5 2567 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 A0A0B4J2C4 111 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 MYMXA0A1B0GTQ4 84 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 FAM223BA6NKX1 122 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 IQCF6A8MYZ5 107 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 SLC25A20O43772 301 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 WISP3O95389 354 aaPredicted RBP1.98□□□□□ -2.09
CD44-229ENST00000528672 SUPT4H1P63272 117 aaKnown RBP1.98□□□□□ -2.09
CD44-229ENST00000528672 FAM229BQ4G0N7 80 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 VMO1Q7Z5L0 202 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 FAM19A2Q8N3H0 131 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 Q8N814 137 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 ST20-AS1Q8NBB2 130 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 Q8NDZ9 215 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 IFI27L1Q96BM0 104 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 Q96M85 177 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 RETNLBQ9BQ08 111 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 CMC2Q9NRP2 79 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 NHP2Q9NX24 153 aaKnown RBP1.98□□□□□ -2.09
CD44-229ENST00000528672 USP54Q70EL1 1684 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 TRPM7Q96QT4 1865 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 DOCK9Q9BZ29 2069 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 TUBGCP6Q96RT7 1819 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 RGPD8O14715 1765 aaPredicted RBP1.98□□□□□ -2.09
CD44-229ENST00000528672 LAMB1P07942 1786 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 MAST2Q6P0Q8 1798 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 RGPD5Q99666 1765 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 MAST1Q9Y2H9 1570 aa1.98□□□□□ -2.09
CD44-229ENST00000528672 MED12LQ86YW9 2145 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 PLXNB3Q9ULL4 1909 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 ATP7AQ04656 1500 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 OBSL1O75147 1896 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 CLTCQ00610 1675 aaKnown RBP1.97□□□□□ -2.09
CD44-229ENST00000528672 ALS2Q96Q42 1657 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 DSCAMO60469 2012 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 EPG5Q9HCE0 2579 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 IGKV2D-26A0A0A0MRZ7 120 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 IGHV3-21A0A0B4J1V1 117 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 TRAV40A0A0B4J280 105 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 PIGBOS1A0A0B4J2F0 54 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 LOC107984156A0A0G2JMH3 177 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 A0A1B0GWA3 101 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 HCG22E2RYF7 251 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 IGHV1-69P01742 117 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 IGLV7-43P04211 117 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 NDUFA11Q86Y39 141 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 ARL17AQ8IVW1 177 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 RPRMLQ8N4K4 120 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 CNEP1R1Q8N9A8 125 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 DYNLRB2Q8TF09 96 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 CYP4F30PQ9H0H9 118 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 PROK2Q9HC23 129 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 DYNLRB1Q9NP97 96 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 ABRACLQ9P1F3 81 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 S4R3C0 116 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 EIF2AK4Q9P2K8 1649 aaKnown RBP1.97□□□□□ -2.09
CD44-229ENST00000528672 SZT2Q5T011 3432 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 STRCP1A6NGW2 1772 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 MROH2BQ7Z745 1585 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 POLR1AO95602 1720 aaPredicted RBP1.97□□□□□ -2.09
CD44-229ENST00000528672 NUP188Q5SRE5 1749 aa1.97□□□□□ -2.09
CD44-229ENST00000528672 COL27A1Q8IZC6 1860 aaPredicted RBP1.97□□□□□ -2.09
CD44-229ENST00000528672 EP400Q96L91 3159 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 NUP98P52948 1817 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 EXPH5Q8NEV8 1989 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 MRC1P22897 1456 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 PTPRDP23468 1912 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 SPTBN5Q9NRC6 3674 aaKnown RBP1.96□□□□□ -2.1
CD44-229ENST00000528672 IGKV2-28A0A075B6P5 120 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 TRAV7A0A075B6U4 112 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 TMSB15BA0A087X1C1 80 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 TRBV10-2A0A0K0K1G8 114 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 C17orf51A8MQB3 221 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 C5orf67F2Z3F1 127 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 H3BMM0 161 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 IGKV2D-28P01615 120 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 PRH1P02810 166 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 CAV3P56539 151 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 ZNF117Q03924 483 aa1.96□□□□□ -2.1
CD44-229ENST00000528672 EIF4EBP1Q13541 118 aaPredicted RBP1.96□□□□□ -2.1
CD44-229ENST00000528672 MIAQ16674 131 aa1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms