RNA–Protein interactions for RNA: ENST00000526025.1

CD44-222, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2 BASIC

Gene CD44, Length 1,052 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-222ENST00000526025 DNAJC30Q96LL9 226 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 Q9UF83 564 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 KMT2AQ03164 3969 aa14.3□□□□□ -0.12
CD44-222ENST00000526025 A0A1B0GXF2 115 aa14.29□□□□□ -0.12
CD44-222ENST00000526025 UBE2D3P61077 147 aa14.29□□□□□ -0.12
CD44-222ENST00000526025 UBE2D2P62837 147 aa14.29□□□□□ -0.12
CD44-222ENST00000526025 ZNRF2Q8NHG8 242 aa14.29□□□□□ -0.12
CD44-222ENST00000526025 GTSF1LQ9H1H1 148 aa14.29□□□□□ -0.12
CD44-222ENST00000526025 C7orf77A4D0Y5 90 aa14.28□□□□□ -0.12
CD44-222ENST00000526025 HBBP68871 147 aa14.28□□□□□ -0.12
CD44-222ENST00000526025 HYDINQ4G0P3 5121 aa14.28□□□□□ -0.12
CD44-222ENST00000526025 RASL11AQ6T310 242 aa14.28□□□□□ -0.12
CD44-222ENST00000526025 SVBPQ8N300 66 aa14.28□□□□□ -0.12
CD44-222ENST00000526025 GATD1Q8NB37 220 aa14.28□□□□□ -0.12
CD44-222ENST00000526025 TRAV9-1A0A075B6T8 112 aa14.27□□□□□ -0.13
CD44-222ENST00000526025 SNAPINO95295 136 aa14.26□□□□□ -0.13
CD44-222ENST00000526025 APOC3P02656 99 aa14.26□□□□□ -0.13
CD44-222ENST00000526025 KCNIP4Q6PIL6 250 aa14.26□□□□□ -0.13
CD44-222ENST00000526025 BTF3L4Q96K17 158 aa14.26□□□□□ -0.13
CD44-222ENST00000526025 NIT2Q9NQR4 276 aa14.26□□□□□ -0.13
CD44-222ENST00000526025 MRPL54Q6P161 138 aaKnown RBP14.25□□□□□ -0.13
CD44-222ENST00000526025 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.25□□□□□ -0.13
CD44-222ENST00000526025 MRAP2Q96G30 205 aa14.25□□□□□ -0.13
CD44-222ENST00000526025 RAB4AP20338 218 aa14.24□□□□□ -0.13
CD44-222ENST00000526025 CAMPP49913 170 aa14.24□□□□□ -0.13
CD44-222ENST00000526025 LELP1Q5T871 98 aa14.24□□□□□ -0.13
CD44-222ENST00000526025 FAM104BQ5XKR9 115 aa14.24□□□□□ -0.13
CD44-222ENST00000526025 DAZ4Q86SG3 579 aaKnown RBP14.24□□□□□ -0.13
CD44-222ENST00000526025 RNF185Q96GF1 192 aa14.24□□□□□ -0.13
CD44-222ENST00000526025 DAZ3Q9NR90 486 aaKnown RBP14.24□□□□□ -0.13
CD44-222ENST00000526025 TNFRSF18Q9Y5U5 241 aa14.24□□□□□ -0.13
CD44-222ENST00000526025 AMN1Q8IY45 258 aa14.23□□□□□ -0.13
CD44-222ENST00000526025 SLC7A5P1Q8MH63 180 aa14.23□□□□□ -0.13
CD44-222ENST00000526025 Q9H8V8 135 aa14.23□□□□□ -0.13
CD44-222ENST00000526025 TMEM97Q5BJF2 176 aa14.22□□□□□ -0.13
CD44-222ENST00000526025 RPS10P5Q9NQ39 176 aa14.22□□□□□ -0.13
CD44-222ENST00000526025 RYR3Q15413 4870 aa14.22□□□□□ -0.13
CD44-222ENST00000526025 TRAV8-6A0A0B4J262 113 aa14.21□□□□□ -0.13
CD44-222ENST00000526025 TRAV26-2A0A0B4J265 109 aa14.21□□□□□ -0.13
CD44-222ENST00000526025 SIVA1O15304 175 aa14.21□□□□□ -0.13
CD44-222ENST00000526025 S100PP25815 95 aa14.21□□□□□ -0.13
CD44-222ENST00000526025 TRBV6-5A0A0K0K1A5 114 aa14.2□□□□□ -0.14
CD44-222ENST00000526025 PPP1R17O96001 155 aa14.2□□□□□ -0.14
CD44-222ENST00000526025 K7EP13 123 aa14.19□□□□□ -0.14
CD44-222ENST00000526025 TTC32Q5I0X7 151 aa14.19□□□□□ -0.14
CD44-222ENST00000526025 Q6ZR54 194 aa14.19□□□□□ -0.14
CD44-222ENST00000526025 DNAH10OSP0CZ25 163 aa14.18□□□□□ -0.14
CD44-222ENST00000526025 MRPL51Q4U2R6 128 aaKnown RBP14.18□□□□□ -0.14
CD44-222ENST00000526025 OR10J3Q5JRS4 329 aa14.18□□□□□ -0.14
CD44-222ENST00000526025 NBDYA0A0U1RRE5 68 aa14.17□□□□□ -0.14
CD44-222ENST00000526025 RPL39LQ96EH5 51 aaKnown RBP14.17□□□□□ -0.14
CD44-222ENST00000526025 TRBV6-8A0A0A6YYG3 113 aa14.16□□□□□ -0.14
CD44-222ENST00000526025 PPBPP02775 128 aa14.16□□□□□ -0.14
CD44-222ENST00000526025 WFDC10BQ8IUB3 73 aa14.16□□□□□ -0.14
CD44-222ENST00000526025 IGLV2-18A0A075B6J9 118 aa14.15□□□□□ -0.14
CD44-222ENST00000526025 IGHV3-38A0A0C4DH36 116 aa14.15□□□□□ -0.14
CD44-222ENST00000526025 BTF3P20290 206 aaKnown RBP14.15□□□□□ -0.14
CD44-222ENST00000526025 LINC01556Q5JQF7 62 aa14.15□□□□□ -0.14
CD44-222ENST00000526025 COX19Q49B96 90 aa14.14□□□□□ -0.15
CD44-222ENST00000526025 NRACQ8N912 160 aa14.14□□□□□ -0.15
CD44-222ENST00000526025 ST20Q9HBF5 79 aa14.14□□□□□ -0.15
CD44-222ENST00000526025 URGCP-MRPS24S4R325 110 aa14.14□□□□□ -0.15
CD44-222ENST00000526025 TRBV24-1A0A075B6N3 115 aa14.13□□□□□ -0.15
CD44-222ENST00000526025 TRAV9-2A0A087WT02 112 aa14.13□□□□□ -0.15
CD44-222ENST00000526025 SDHAF1A6NFY7 115 aa14.13□□□□□ -0.15
CD44-222ENST00000526025 PHOX2AO14813 284 aa14.13□□□□□ -0.15
CD44-222ENST00000526025 GAS8-AS1O95177 125 aa14.13□□□□□ -0.15
CD44-222ENST00000526025 CKS2P33552 79 aa14.13□□□□□ -0.15
CD44-222ENST00000526025 RPS10P46783 165 aaKnown RBP14.13□□□□□ -0.15
CD44-222ENST00000526025 IQCJQ1A5X6 159 aa14.13□□□□□ -0.15
CD44-222ENST00000526025 NCR2O95944 276 aa14.12□□□□□ -0.15
CD44-222ENST00000526025 PKIAP61925 76 aa14.12□□□□□ -0.15
CD44-222ENST00000526025 NTM-AS1Q6ZSK4 140 aa14.12□□□□□ -0.15
CD44-222ENST00000526025 C10orf126Q8N4M7 172 aa14.12□□□□□ -0.15
CD44-222ENST00000526025 C20orf78Q9BR46 151 aa14.12□□□□□ -0.15
CD44-222ENST00000526025 TMEM70Q9BUB7 260 aa14.12□□□□□ -0.15
CD44-222ENST00000526025 CHCHD7Q9BUK0 85 aa14.12□□□□□ -0.15
CD44-222ENST00000526025 TRBV25-1A0A075B6N4 114 aa14.11□□□□□ -0.15
CD44-222ENST00000526025 POLR2KP53803 58 aaKnown RBP14.11□□□□□ -0.15
CD44-222ENST00000526025 RPL32P62910 135 aaKnown RBP14.11□□□□□ -0.15
CD44-222ENST00000526025 COTL1Q14019 142 aa14.11□□□□□ -0.15
CD44-222ENST00000526025 TMEM136Q6ZRR5 245 aa14.11□□□□□ -0.15
CD44-222ENST00000526025 ORMDL3Q8N138 153 aa14.11□□□□□ -0.15
CD44-222ENST00000526025 GNB1LQ9BYB4 327 aa14.11□□□□□ -0.15
CD44-222ENST00000526025 LAMTOR2Q9Y2Q5 125 aa14.11□□□□□ -0.15
CD44-222ENST00000526025 IGHV1-24A0A0C4DH33 117 aa14.1□□□□□ -0.15
CD44-222ENST00000526025 TRBV27A0A0K0K1C4 114 aa14.1□□□□□ -0.15
CD44-222ENST00000526025 D6R8Y8 96 aa14.1□□□□□ -0.15
CD44-222ENST00000526025 SMKR1H3BMG3 65 aa14.1□□□□□ -0.15
CD44-222ENST00000526025 I3L3M4 83 aa14.1□□□□□ -0.15
CD44-222ENST00000526025 HLA-DQA1P01909 254 aa14.1□□□□□ -0.15
CD44-222ENST00000526025 SUMO2P61956 95 aaKnown RBP14.1□□□□□ -0.15
CD44-222ENST00000526025 NIT1Q86X76 327 aa14.1□□□□□ -0.15
CD44-222ENST00000526025 KRTAP1-5Q9BYS1 174 aa14.09□□□□□ -0.15
CD44-222ENST00000526025 M0R2N4 97 aa14.08□□□□□ -0.16
CD44-222ENST00000526025 TNFRSF6BO95407 300 aa14.08□□□□□ -0.16
CD44-222ENST00000526025 MT-ND6P03923 174 aa14.08□□□□□ -0.16
CD44-222ENST00000526025 ELOBQ15370 118 aa14.08□□□□□ -0.16
CD44-222ENST00000526025 ATRAIDQ6UW56 229 aa14.08□□□□□ -0.16
CD44-222ENST00000526025 VCYO14598 125 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms