RNA–Protein interactions for RNA: ENST00000514305.5

USP53-208, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 504 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-208ENST00000514305 SREK1IP1Q8N9Q2 155 aaPredicted RBP14.07□□□□□ -0.16
USP53-208ENST00000514305 FRZBQ92765 325 aa14.07□□□□□ -0.16
USP53-208ENST00000514305 TMEM191AQ9H0A3 160 aa14.07□□□□□ -0.16
USP53-208ENST00000514305 DNAH10Q8IVF4 4471 aa14.07□□□□□ -0.16
USP53-208ENST00000514305 P0DMU3 169 aa14.06□□□□□ -0.16
USP53-208ENST00000514305 FAM231AP0DMU4 169 aa14.06□□□□□ -0.16
USP53-208ENST00000514305 FAM231CP0DMU5 169 aa14.06□□□□□ -0.16
USP53-208ENST00000514305 HBBP68871 147 aa14.06□□□□□ -0.16
USP53-208ENST00000514305 GYPEP15421 78 aa14.05□□□□□ -0.16
USP53-208ENST00000514305 SRIP30626 198 aa14.05□□□□□ -0.16
USP53-208ENST00000514305 FAM3BP58499 235 aaPredicted RBP14.05□□□□□ -0.16
USP53-208ENST00000514305 KIF25-AS1Q9Y6Z4 181 aa14.05□□□□□ -0.16
USP53-208ENST00000514305 RPL36AP83881 106 aaKnown RBP14.04□□□□□ -0.16
USP53-208ENST00000514305 RPL36ALQ969Q0 106 aaKnown RBP14.04□□□□□ -0.16
USP53-208ENST00000514305 VSIG2Q96IQ7 327 aa14.04□□□□□ -0.16
USP53-208ENST00000514305 CAMPP49913 170 aa14.03□□□□□ -0.16
USP53-208ENST00000514305 MRPL54Q6P161 138 aaKnown RBP14.03□□□□□ -0.16
USP53-208ENST00000514305 RASL11AQ6T310 242 aa14.03□□□□□ -0.16
USP53-208ENST00000514305 HECTD4Q9Y4D8 3996 aa14.03□□□□□ -0.16
USP53-208ENST00000514305 LINC00336Q6ZUF6 198 aa14.02□□□□□ -0.17
USP53-208ENST00000514305 NEGR1Q7Z3B1 354 aa14.02□□□□□ -0.17
USP53-208ENST00000514305 KRTAP4-8Q9BYQ9 185 aa14.02□□□□□ -0.17
USP53-208ENST00000514305 CCL18P55774 89 aa14.01□□□□□ -0.17
USP53-208ENST00000514305 COX19Q49B96 90 aa14.01□□□□□ -0.17
USP53-208ENST00000514305 DNAJC30Q96LL9 226 aa14.01□□□□□ -0.17
USP53-208ENST00000514305 MRPL18Q9H0U6 180 aaKnown RBP14.01□□□□□ -0.17
USP53-208ENST00000514305 A0A096LPF7 62 aa14□□□□□ -0.17
USP53-208ENST00000514305 PPP1R17O96001 155 aa14□□□□□ -0.17
USP53-208ENST00000514305 TNFRSF18Q9Y5U5 241 aa14□□□□□ -0.17
USP53-208ENST00000514305 TRBV7-3A0A075B6L6 115 aa13.99□□□□□ -0.17
USP53-208ENST00000514305 LINC00315P59091 139 aa13.99□□□□□ -0.17
USP53-208ENST00000514305 UBE2DNLQ8IWF7 75 aa13.99□□□□□ -0.17
USP53-208ENST00000514305 MRAP2Q96G30 205 aa13.99□□□□□ -0.17
USP53-208ENST00000514305 A0A1B0GXF2 115 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 GAGE12JA6NER3 117 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 GAGE1Q13065 139 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 GAGE4Q13068 117 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 GAGE5Q13069 117 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 GAGE13Q4V321 117 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 SUMO4Q6EEV6 95 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 Q6ZSN1 163 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 URGCP-MRPS24S4R325 110 aa13.98□□□□□ -0.17
USP53-208ENST00000514305 FAM104BQ5XKR9 115 aa13.97□□□□□ -0.17
USP53-208ENST00000514305 GATD1Q8NB37 220 aa13.97□□□□□ -0.17
USP53-208ENST00000514305 ATP6V0E2Q8NHE4 81 aa13.97□□□□□ -0.17
USP53-208ENST00000514305 ZNRF2Q8NHG8 242 aa13.97□□□□□ -0.17
USP53-208ENST00000514305 NIT2Q9NQR4 276 aa13.97□□□□□ -0.17
USP53-208ENST00000514305 M0QY20 66 aa13.96□□□□□ -0.17
USP53-208ENST00000514305 RAB4AP20338 218 aa13.96□□□□□ -0.17
USP53-208ENST00000514305 SMCO4Q9NRQ5 59 aa13.96□□□□□ -0.17
USP53-208ENST00000514305 NACAE9PAV3 2078 aa13.95□□□□□ -0.18
USP53-208ENST00000514305 PPBPP02775 128 aa13.95□□□□□ -0.18
USP53-208ENST00000514305 TMEM97Q5BJF2 176 aa13.95□□□□□ -0.18
USP53-208ENST00000514305 AMN1Q8IY45 258 aa13.95□□□□□ -0.18
USP53-208ENST00000514305 LOC100131303A0A0U1RQF7 123 aa13.94□□□□□ -0.18
USP53-208ENST00000514305 M0R2N4 97 aa13.94□□□□□ -0.18
USP53-208ENST00000514305 TIRAPP58753 221 aa13.94□□□□□ -0.18
USP53-208ENST00000514305 DAZ4Q86SG3 579 aaKnown RBP13.94□□□□□ -0.18
USP53-208ENST00000514305 NEXN-AS1Q8NBZ9 246 aa13.94□□□□□ -0.18
USP53-208ENST00000514305 GTSF1LQ9H1H1 148 aa13.94□□□□□ -0.18
USP53-208ENST00000514305 DAZ3Q9NR90 486 aaKnown RBP13.94□□□□□ -0.18
USP53-208ENST00000514305 S100A1P23297 94 aa13.93□□□□□ -0.18
USP53-208ENST00000514305 CKS2P33552 79 aa13.93□□□□□ -0.18
USP53-208ENST00000514305 HLA-DQA1P01909 254 aa13.92□□□□□ -0.18
USP53-208ENST00000514305 LYPD5Q6UWN5 251 aa13.92□□□□□ -0.18
USP53-208ENST00000514305 RNF185Q96GF1 192 aa13.92□□□□□ -0.18
USP53-208ENST00000514305 PRSS29PA6NIE9 313 aa13.91□□□□□ -0.18
USP53-208ENST00000514305 MT-ND6P03923 174 aa13.91□□□□□ -0.18
USP53-208ENST00000514305 UBE2D3P61077 147 aa13.91□□□□□ -0.18
USP53-208ENST00000514305 UBE2D2P62837 147 aa13.91□□□□□ -0.18
USP53-208ENST00000514305 MRPL51Q4U2R6 128 aaKnown RBP13.91□□□□□ -0.18
USP53-208ENST00000514305 OR10J3Q5JRS4 329 aa13.91□□□□□ -0.18
USP53-208ENST00000514305 GNB1LQ9BYB4 327 aa13.91□□□□□ -0.18
USP53-208ENST00000514305 TRBV24-1A0A075B6N3 115 aa13.9□□□□□ -0.18
USP53-208ENST00000514305 ELOBQ15370 118 aa13.9□□□□□ -0.18
USP53-208ENST00000514305 ESRGQ1W209 222 aa13.9□□□□□ -0.18
USP53-208ENST00000514305 IGLV2-18A0A075B6J9 118 aa13.89□□□□□ -0.19
USP53-208ENST00000514305 TRAV8-6A0A0B4J262 113 aa13.89□□□□□ -0.19
USP53-208ENST00000514305 TRAV26-2A0A0B4J265 109 aa13.89□□□□□ -0.19
USP53-208ENST00000514305 LINC00694P0DN24 101 aa13.89□□□□□ -0.19
USP53-208ENST00000514305 ORMDL3Q8N138 153 aa13.89□□□□□ -0.19
USP53-208ENST00000514305 ST20Q9HBF5 79 aa13.89□□□□□ -0.19
USP53-208ENST00000514305 MRPS16Q9Y3D3 137 aaKnown RBP13.89□□□□□ -0.19
USP53-208ENST00000514305 TRBV6-5A0A0K0K1A5 114 aa13.88□□□□□ -0.19
USP53-208ENST00000514305 PHOX2AO14813 284 aa13.88□□□□□ -0.19
USP53-208ENST00000514305 RTL8CO15255 209 aa13.88□□□□□ -0.19
USP53-208ENST00000514305 ATRAIDQ6UW56 229 aa13.88□□□□□ -0.19
USP53-208ENST00000514305 KRTAP17-1Q9BYP8 105 aa13.88□□□□□ -0.19
USP53-208ENST00000514305 LAMTOR2Q9Y2Q5 125 aa13.88□□□□□ -0.19
USP53-208ENST00000514305 A0A1B0GVY2 172 aa13.87□□□□□ -0.19
USP53-208ENST00000514305 LELP1Q5T871 98 aa13.87□□□□□ -0.19
USP53-208ENST00000514305 TMEM136Q6ZRR5 245 aa13.87□□□□□ -0.19
USP53-208ENST00000514305 UPK3BQ9BT76 320 aa13.87□□□□□ -0.19
USP53-208ENST00000514305 LINC00588Q9Y4M8 146 aa13.87□□□□□ -0.19
USP53-208ENST00000514305 HERC2O95714 4834 aa13.87□□□□□ -0.19
USP53-208ENST00000514305 APCSP02743 223 aa13.86□□□□□ -0.19
USP53-208ENST00000514305 C20orf78Q9BR46 151 aa13.86□□□□□ -0.19
USP53-208ENST00000514305 SDHAF1A6NFY7 115 aa13.85□□□□□ -0.19
USP53-208ENST00000514305 D6R8Y8 96 aa13.85□□□□□ -0.19
USP53-208ENST00000514305 PMCHP20382 165 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms