RNA–Protein interactions for RNA: ENST00000496189.1

SF3A1-209, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 693 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-209ENST00000496189 NFE4Q86UQ8 179 aa11.2□□□□□ -0.62
SF3A1-209ENST00000496189 WFDC10BQ8IUB3 73 aa11.2□□□□□ -0.62
SF3A1-209ENST00000496189 KIF25-AS1Q9Y6Z4 181 aa11.2□□□□□ -0.62
SF3A1-209ENST00000496189 A0A087WWC5 75 aa11.19□□□□□ -0.62
SF3A1-209ENST00000496189 IGHV3-38A0A0C4DH36 116 aa11.19□□□□□ -0.62
SF3A1-209ENST00000496189 MT-ND4LP03901 98 aa11.19□□□□□ -0.62
SF3A1-209ENST00000496189 RIGQ13278 110 aa11.19□□□□□ -0.62
SF3A1-209ENST00000496189 FRAS1Q86XX4 4008 aa11.18□□□□□ -0.62
SF3A1-209ENST00000496189 SMIM27A0A1W2PRY6 76 aa11.18□□□□□ -0.62
SF3A1-209ENST00000496189 NUP35Q8NFH5 326 aa11.18□□□□□ -0.62
SF3A1-209ENST00000496189 ANAPC16Q96DE5 110 aa11.18□□□□□ -0.62
SF3A1-209ENST00000496189 SEC11CQ9BY50 192 aa11.18□□□□□ -0.62
SF3A1-209ENST00000496189 KRTAP1-5Q9BYS1 174 aa11.18□□□□□ -0.62
SF3A1-209ENST00000496189 TRBV7-3A0A075B6L6 115 aa11.17□□□□□ -0.62
SF3A1-209ENST00000496189 DNAH10OSP0CZ25 163 aa11.17□□□□□ -0.62
SF3A1-209ENST00000496189 LINC00315P59091 139 aa11.17□□□□□ -0.62
SF3A1-209ENST00000496189 URGCP-MRPS24S4R325 110 aa11.16□□□□□ -0.62
SF3A1-209ENST00000496189 A0A1B0GW15 77 aa11.15□□□□□ -0.62
SF3A1-209ENST00000496189 LINC01556Q5JQF7 62 aa11.15□□□□□ -0.62
SF3A1-209ENST00000496189 KCNIP4Q6PIL6 250 aa11.15□□□□□ -0.62
SF3A1-209ENST00000496189 DNAJC30Q96LL9 226 aa11.15□□□□□ -0.62
SF3A1-209ENST00000496189 TNFRSF18Q9Y5U5 241 aa11.15□□□□□ -0.62
SF3A1-209ENST00000496189 M0QY20 66 aa11.14□□□□□ -0.63
SF3A1-209ENST00000496189 EREGO14944 169 aa11.14□□□□□ -0.63
SF3A1-209ENST00000496189 LINC00694P0DN24 101 aa11.14□□□□□ -0.63
SF3A1-209ENST00000496189 SUMO4Q6EEV6 95 aa11.14□□□□□ -0.63
SF3A1-209ENST00000496189 RASL11AQ6T310 242 aa11.14□□□□□ -0.63
SF3A1-209ENST00000496189 NEXN-AS1Q8NBZ9 246 aa11.14□□□□□ -0.63
SF3A1-209ENST00000496189 TMEM191AQ9H0A3 160 aa11.14□□□□□ -0.63
SF3A1-209ENST00000496189 DNAH2Q9P225 4427 aa11.13□□□□□ -0.63
SF3A1-209ENST00000496189 S100A8P05109 93 aa11.13□□□□□ -0.63
SF3A1-209ENST00000496189 ADCYAP1P18509 176 aa11.13□□□□□ -0.63
SF3A1-209ENST00000496189 UBE2D3P61077 147 aa11.13□□□□□ -0.63
SF3A1-209ENST00000496189 UBE2D2P62837 147 aa11.13□□□□□ -0.63
SF3A1-209ENST00000496189 TNP2Q05952 138 aa11.13□□□□□ -0.63
SF3A1-209ENST00000496189 FRZBQ92765 325 aa11.13□□□□□ -0.63
SF3A1-209ENST00000496189 Q9UF83 564 aa11.13□□□□□ -0.63
SF3A1-209ENST00000496189 HECTD4Q9Y4D8 3996 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 BIRC6Q9NR09 4857 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 A0A1B0GVY2 172 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 IGHV3-30P01768 117 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 IGHV3-33P01772 117 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 IGHV3-30-3P0DP02 117 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 IGHV3-30-5P0DP03 117 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 TMEM97Q5BJF2 176 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 CTDSP1Q9GZU7 261 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 NIT2Q9NQR4 276 aa11.12□□□□□ -0.63
SF3A1-209ENST00000496189 DAZ4Q86SG3 579 aaKnown RBP11.11□□□□□ -0.63
SF3A1-209ENST00000496189 DAZ3Q9NR90 486 aaKnown RBP11.11□□□□□ -0.63
SF3A1-209ENST00000496189 PSCAO43653 123 aa11.1□□□□□ -0.63
SF3A1-209ENST00000496189 NDUFA5Q16718 116 aa11.1□□□□□ -0.63
SF3A1-209ENST00000496189 A0A087WX48 190 aa11.09□□□□□ -0.63
SF3A1-209ENST00000496189 CAMPP49913 170 aa11.09□□□□□ -0.63
SF3A1-209ENST00000496189 PKIAP61925 76 aa11.09□□□□□ -0.63
SF3A1-209ENST00000496189 HBBP68871 147 aa11.09□□□□□ -0.63
SF3A1-209ENST00000496189 C10orf91Q5T1B1 145 aa11.09□□□□□ -0.63
SF3A1-209ENST00000496189 ATP5L2Q7Z4Y8 100 aa11.09□□□□□ -0.63
SF3A1-209ENST00000496189 IMMP2LQ96T52 175 aa11.09□□□□□ -0.63
SF3A1-209ENST00000496189 CARHSP1Q9Y2V2 147 aaKnown RBP11.09□□□□□ -0.63
SF3A1-209ENST00000496189 DNAH17Q9UFH2 4485 aa11.08□□□□□ -0.64
SF3A1-209ENST00000496189 LAGE3Q14657 143 aa11.08□□□□□ -0.64
SF3A1-209ENST00000496189 ELOBQ15370 118 aa11.08□□□□□ -0.64
SF3A1-209ENST00000496189 MRPL54Q6P161 138 aaKnown RBP11.08□□□□□ -0.64
SF3A1-209ENST00000496189 GATD1Q8NB37 220 aa11.08□□□□□ -0.64
SF3A1-209ENST00000496189 MRAP2Q96G30 205 aa11.08□□□□□ -0.64
SF3A1-209ENST00000496189 CHCHD7Q9BUK0 85 aa11.08□□□□□ -0.64
SF3A1-209ENST00000496189 TRAV26-2A0A0B4J265 109 aa11.07□□□□□ -0.64
SF3A1-209ENST00000496189 IBA57-AS1B1ANH7 110 aa11.07□□□□□ -0.64
SF3A1-209ENST00000496189 PPP1R17O96001 155 aa11.07□□□□□ -0.64
SF3A1-209ENST00000496189 RAB4AP20338 218 aa11.07□□□□□ -0.64
SF3A1-209ENST00000496189 Q9HAA7 133 aa11.07□□□□□ -0.64
SF3A1-209ENST00000496189 FAT2Q9NYQ8 4349 aa11.06□□□□□ -0.64
SF3A1-209ENST00000496189 TRBV6-8A0A0A6YYG3 113 aa11.06□□□□□ -0.64
SF3A1-209ENST00000496189 TRAV8-3A0A0A6YYJ7 113 aa11.06□□□□□ -0.64
SF3A1-209ENST00000496189 RHEBQ15382 184 aa11.06□□□□□ -0.64
SF3A1-209ENST00000496189 AMN1Q8IY45 258 aa11.06□□□□□ -0.64
SF3A1-209ENST00000496189 BTF3L4Q96K17 158 aa11.06□□□□□ -0.64
SF3A1-209ENST00000496189 TM2D2Q9BX73 214 aa11.06□□□□□ -0.64
SF3A1-209ENST00000496189 TMEM262E9PQX1 116 aa11.05□□□□□ -0.64
SF3A1-209ENST00000496189 S100PP25815 95 aa11.05□□□□□ -0.64
SF3A1-209ENST00000496189 FAM104BQ5XKR9 115 aa11.05□□□□□ -0.64
SF3A1-209ENST00000496189 Q6ZRN7 208 aaPredicted RBP11.05□□□□□ -0.64
SF3A1-209ENST00000496189 NIT1Q86X76 327 aa11.05□□□□□ -0.64
SF3A1-209ENST00000496189 RMI2Q96E14 147 aa11.05□□□□□ -0.64
SF3A1-209ENST00000496189 CHCHD5Q9BSY4 110 aa11.05□□□□□ -0.64
SF3A1-209ENST00000496189 TMEM242Q9NWH2 141 aa11.05□□□□□ -0.64
SF3A1-209ENST00000496189 TRBV25-1A0A075B6N4 114 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 A0A1B0GXF2 115 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 C7orf77A4D0Y5 90 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 C16orf90A8MZG2 172 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 APOC3P02656 99 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 SPATA12Q7Z6I5 190 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 SVBPQ8N300 66 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 CLRN3Q8NCR9 226 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 RNF185Q96GF1 192 aa11.04□□□□□ -0.64
SF3A1-209ENST00000496189 TRAV9-1A0A075B6T8 112 aa11.03□□□□□ -0.64
SF3A1-209ENST00000496189 SNAPINO95295 136 aa11.03□□□□□ -0.64
SF3A1-209ENST00000496189 RPL39LQ96EH5 51 aaKnown RBP11.03□□□□□ -0.64
SF3A1-209ENST00000496189 ST20Q9HBF5 79 aa11.03□□□□□ -0.64
SF3A1-209ENST00000496189 RPS10P5Q9NQ39 176 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms