RNA–Protein interactions for RNA: ENST00000489028.1

RFC4-213, Transcript of replication factor C subunit 4, humanhuman

TSL 3

Gene RFC4, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-213ENST00000489028 SIX6O95475 246 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 APOC2P02655 101 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 SMIM6P0DI80 62 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 PP6455Q8WZ26 134 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 LSM10Q969L4 123 aaKnown RBP0.58□□□□□ -2.32
RFC4-213ENST00000489028 PPP3R2Q96LZ3 170 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 AQP10Q96PS8 301 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 LINC00312Q9Y6C7 94 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 MED13LQ71F56 2210 aa0.58□□□□□ -2.32
RFC4-213ENST00000489028 MBD5Q9P267 1494 aa0.57□□□□□ -2.32
RFC4-213ENST00000489028 A0A1B0GV90 55 aa0.57□□□□□ -2.32
RFC4-213ENST00000489028 ACYP2P14621 99 aa0.57□□□□□ -2.32
RFC4-213ENST00000489028 RBM3P98179 157 aaKnown RBP0.57□□□□□ -2.32
RFC4-213ENST00000489028 Q8N8P6 123 aa0.57□□□□□ -2.32
RFC4-213ENST00000489028 Q96NJ1 140 aa0.57□□□□□ -2.32
RFC4-213ENST00000489028 PLAC8Q9NZF1 115 aa0.57□□□□□ -2.32
RFC4-213ENST00000489028 BCL9LQ86UU0 1499 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 NRXN2Q9P2S2 1712 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 MUC22E2RYF6 1773 aaPredicted RBP0.56□□□□□ -2.32
RFC4-213ENST00000489028 GVQW2A0A096LPI5 108 aaPredicted RBP0.56□□□□□ -2.32
RFC4-213ENST00000489028 LOC100130705A0A1B0GUX0 176 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 SPAARA0A1B0GVQ0 90 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 CLPSL1A2RUU4 121 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 TMEM14DPA8MWL7 114 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 MIF4GDA9UHW6 222 aaKnown RBP0.56□□□□□ -2.32
RFC4-213ENST00000489028 HCG22E2RYF7 251 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 IFNGP01579 166 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 KRTAP19-3Q7Z4W3 81 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 VMO1Q7Z5L0 202 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 C8orf59Q8N0T1 100 aaPredicted RBP0.56□□□□□ -2.32
RFC4-213ENST00000489028 TMEM203Q969S6 136 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 SPANXDQ9BXN6 97 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 SCN3BQ9NY72 215 aa0.56□□□□□ -2.32
RFC4-213ENST00000489028 SMG6Q86US8 1419 aaKnown RBP0.55□□□□□ -2.32
RFC4-213ENST00000489028 CASKIN1Q8WXD9 1431 aa0.55□□□□□ -2.32
RFC4-213ENST00000489028 PLXNA1Q9UIW2 1896 aa0.55□□□□□ -2.32
RFC4-213ENST00000489028 TRGV1A0A0A0MS02 117 aa0.55□□□□□ -2.32
RFC4-213ENST00000489028 CATR1Q13166 79 aa0.55□□□□□ -2.32
RFC4-213ENST00000489028 WFDC6Q9BQY6 131 aa0.55□□□□□ -2.32
RFC4-213ENST00000489028 C2orf88Q9BSF0 95 aa0.55□□□□□ -2.32
RFC4-213ENST00000489028 MYH9P35579 1960 aaKnown RBP0.55□□□□□ -2.32
RFC4-213ENST00000489028 KTN1Q86UP2 1357 aaKnown RBP0.55□□□□□ -2.32
RFC4-213ENST00000489028 RBBP6Q7Z6E9 1792 aaKnown RBP0.55□□□□□ -2.32
RFC4-213ENST00000489028 PHIPQ8WWQ0 1821 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 SPEF2Q9C093 1822 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 WDR7Q9Y4E6 1490 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 F5P12259 2224 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 TANC1Q9C0D5 1861 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 LRRC37A3O60309 1634 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 SNAPC5O75971 98 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 TNFP01375 233 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 INSL4Q14641 139 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 C10orf128Q5T292 105 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 MRPL54Q6P161 138 aaKnown RBP0.54□□□□□ -2.32
RFC4-213ENST00000489028 Q6ZRX8 168 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 BAGE3Q86Y29 109 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 R4GMQ9 66 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 PHLPP1O60346 1717 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 MAP2P11137 1827 aaKnown RBP0.54□□□□□ -2.32
RFC4-213ENST00000489028 JMJD1CQ15652 2540 aa0.54□□□□□ -2.32
RFC4-213ENST00000489028 MYO7AQ13402 2215 aa0.53□□□□□ -2.32
RFC4-213ENST00000489028 TRAV1-2A0A0B4J238 106 aa0.53□□□□□ -2.32
RFC4-213ENST00000489028 GCHFRP30047 84 aa0.53□□□□□ -2.32
RFC4-213ENST00000489028 TPPP2P59282 170 aa0.53□□□□□ -2.32
RFC4-213ENST00000489028 MRPS10P82664 201 aaKnown RBP0.53□□□□□ -2.32
RFC4-213ENST00000489028 TTC9CQ8N5M4 171 aa0.53□□□□□ -2.32
RFC4-213ENST00000489028 CYP4F30PQ9H0H9 118 aa0.53□□□□□ -2.32
RFC4-213ENST00000489028 GNG8Q9UK08 70 aa0.53□□□□□ -2.32
RFC4-213ENST00000489028 PXDNQ92626 1479 aa0.53□□□□□ -2.33
RFC4-213ENST00000489028 NAV3Q8IVL0 2385 aa0.53□□□□□ -2.33
RFC4-213ENST00000489028 MYH7P12883 1935 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 F6UZH7 168 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 CORTO00230 105 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 SSSCA1O60232 199 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 PPP1R17O96001 155 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 GNG4P50150 75 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 Q5VV11 94 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 PROK2Q9HC23 129 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 LENEPQ9Y5L5 61 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 PPIP5K1Q6PFW1 1433 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 A2ML1A8K2U0 1454 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 PARP14Q460N5 1801 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 FOCADQ5VW36 1801 aa0.52□□□□□ -2.33
RFC4-213ENST00000489028 LINC00587B1AMM8 73 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 CADP27708 2225 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 CPSF1Q10570 1443 aaKnown RBP0.51□□□□□ -2.33
RFC4-213ENST00000489028 WHAMMP3Q1A5X7 153 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 C9orf153Q5TBE3 101 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 KCPQ6ZWJ8 1503 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 COMMD6Q7Z4G1 85 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 C5orf38Q86SI9 138 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 NALCNQ8IZF0 1738 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 TNS1Q9HBL0 1735 aaKnown RBP0.51□□□□□ -2.33
RFC4-213ENST00000489028 IER3IP1Q9Y5U9 82 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 LAMC3Q9Y6N6 1575 aa0.51□□□□□ -2.33
RFC4-213ENST00000489028 NWD2Q9ULI1 1742 aa0.5□□□□□ -2.33
RFC4-213ENST00000489028 EIF4G3O43432 1585 aaKnown RBP0.5□□□□□ -2.33
RFC4-213ENST00000489028 NCOA3Q9Y6Q9 1424 aa0.5□□□□□ -2.33
RFC4-213ENST00000489028 FAM24AA6NFZ4 105 aa0.5□□□□□ -2.33
RFC4-213ENST00000489028 OOSP1A8MZH6 123 aa0.5□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms