RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 SMIM17P0DL12 118 aa9.28□□□□□ -0.92
SYNE1-226ENST00000488376 CACNG7P62955 275 aa9.28□□□□□ -0.92
SYNE1-226ENST00000488376 SRSF3P84103 164 aaKnown RBP9.28□□□□□ -0.92
SYNE1-226ENST00000488376 NTM-AS1Q6ZSK4 140 aa9.28□□□□□ -0.92
SYNE1-226ENST00000488376 F2Z2F3 143 aa9.27□□□□□ -0.93
SYNE1-226ENST00000488376 FOXA3P55318 350 aaPredicted RBP9.27□□□□□ -0.93
SYNE1-226ENST00000488376 WFDC2Q14508 124 aa9.27□□□□□ -0.93
SYNE1-226ENST00000488376 TEX261Q6UWH6 196 aa9.27□□□□□ -0.93
SYNE1-226ENST00000488376 SMIM7Q9BQ49 75 aa9.27□□□□□ -0.93
SYNE1-226ENST00000488376 KRTAP4-5Q9BYR2 181 aa9.27□□□□□ -0.93
SYNE1-226ENST00000488376 TRBV6-8A0A0A6YYG3 113 aa9.26□□□□□ -0.93
SYNE1-226ENST00000488376 LINC01551Q86U37 167 aa9.26□□□□□ -0.93
SYNE1-226ENST00000488376 MAPKAPK5-AS1Q8N8E1 139 aa9.26□□□□□ -0.93
SYNE1-226ENST00000488376 DEFB104AQ8WTQ1 72 aa9.26□□□□□ -0.93
SYNE1-226ENST00000488376 CNFNQ9BYD5 112 aa9.26□□□□□ -0.93
SYNE1-226ENST00000488376 PSCAO43653 123 aa9.25□□□□□ -0.93
SYNE1-226ENST00000488376 GATCO43716 136 aaKnown RBP9.25□□□□□ -0.93
SYNE1-226ENST00000488376 LAGE3Q14657 143 aa9.25□□□□□ -0.93
SYNE1-226ENST00000488376 TWIST1Q15672 202 aa9.25□□□□□ -0.93
SYNE1-226ENST00000488376 FAM231DQ6ZW35 169 aa9.25□□□□□ -0.93
SYNE1-226ENST00000488376 KLK12Q9UKR0 248 aa9.25□□□□□ -0.93
SYNE1-226ENST00000488376 LRP1BQ9NZR2 4599 aa9.25□□□□□ -0.93
SYNE1-226ENST00000488376 TRAV26-2A0A0B4J265 109 aa9.24□□□□□ -0.93
SYNE1-226ENST00000488376 ZNF727A8MUV8 499 aa9.24□□□□□ -0.93
SYNE1-226ENST00000488376 CDK2AP2O75956 126 aa9.24□□□□□ -0.93
SYNE1-226ENST00000488376 PGLYRP4Q96LB8 373 aa9.24□□□□□ -0.93
SYNE1-226ENST00000488376 DPH3P1Q9H4G8 78 aa9.24□□□□□ -0.93
SYNE1-226ENST00000488376 EREGO14944 169 aa9.23□□□□□ -0.93
SYNE1-226ENST00000488376 LECT2O14960 151 aa9.23□□□□□ -0.93
SYNE1-226ENST00000488376 TRGC1P0CF51 173 aa9.23□□□□□ -0.93
SYNE1-226ENST00000488376 KRTAP10-1P60331 282 aa9.23□□□□□ -0.93
SYNE1-226ENST00000488376 MPV17L2Q567V2 206 aa9.23□□□□□ -0.93
SYNE1-226ENST00000488376 WDR73Q6P4I2 378 aa9.23□□□□□ -0.93
SYNE1-226ENST00000488376 PGPEP1Q9NXJ5 209 aa9.23□□□□□ -0.93
SYNE1-226ENST00000488376 URGCP-MRPS24S4R325 110 aa9.23□□□□□ -0.93
SYNE1-226ENST00000488376 A0A087WX48 190 aa9.22□□□□□ -0.93
SYNE1-226ENST00000488376 TMEM262E9PQX1 116 aa9.22□□□□□ -0.93
SYNE1-226ENST00000488376 NDUFS6O75380 124 aaKnown RBP9.22□□□□□ -0.93
SYNE1-226ENST00000488376 RASL11AQ6T310 242 aa9.22□□□□□ -0.93
SYNE1-226ENST00000488376 Q8N976 141 aa9.22□□□□□ -0.93
SYNE1-226ENST00000488376 GATD1Q8NB37 220 aa9.22□□□□□ -0.93
SYNE1-226ENST00000488376 CHCHD5Q9BSY4 110 aa9.22□□□□□ -0.93
SYNE1-226ENST00000488376 HSPG2P98160 4391 aa9.21□□□□□ -0.93
SYNE1-226ENST00000488376 TRAV8-3A0A0A6YYJ7 113 aa9.21□□□□□ -0.94
SYNE1-226ENST00000488376 GAGE6Q13070 117 aa9.21□□□□□ -0.94
SYNE1-226ENST00000488376 C15orf54Q8N8G6 183 aa9.21□□□□□ -0.94
SYNE1-226ENST00000488376 UBE2WQ96B02 151 aa9.21□□□□□ -0.94
SYNE1-226ENST00000488376 RYR1P21817 5038 aa9.21□□□□□ -0.94
SYNE1-226ENST00000488376 DNAH5Q8TE73 4624 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 A8MWL6 223 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 H7C1H1 209 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 GAS8-AS1O95177 125 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 RPL23P62829 140 aaKnown RBP9.2□□□□□ -0.94
SYNE1-226ENST00000488376 CT83Q5H943 113 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 CDPF1Q6NVV7 123 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 ENHOQ6UWT2 76 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 Q8N814 137 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 ISOC2Q96AB3 205 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 RPL39LQ96EH5 51 aaKnown RBP9.2□□□□□ -0.94
SYNE1-226ENST00000488376 V9GYV3 84 aa9.2□□□□□ -0.94
SYNE1-226ENST00000488376 IGKV2D-24A0A075B6R9 120 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 HIGD1CA8MV81 97 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 ATRAIDQ6UW56 229 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 TSKUQ8WUA8 353 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 BAALCQ8WXS3 180 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 CHCHD7Q9BUK0 85 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 TM2D2Q9BX73 214 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 NIT2Q9NQR4 276 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 OSTCQ9NRP0 149 aa9.19□□□□□ -0.94
SYNE1-226ENST00000488376 ANGP03950 147 aaKnown RBP9.18□□□□□ -0.94
SYNE1-226ENST00000488376 RBX1P62877 108 aa9.18□□□□□ -0.94
SYNE1-226ENST00000488376 HAMPP81172 84 aa9.18□□□□□ -0.94
SYNE1-226ENST00000488376 IQCJQ1A5X6 159 aa9.18□□□□□ -0.94
SYNE1-226ENST00000488376 TMEM241Q24JQ0 296 aa9.18□□□□□ -0.94
SYNE1-226ENST00000488376 CLPSL2Q6UWE3 100 aa9.18□□□□□ -0.94
SYNE1-226ENST00000488376 APOBP04114 4563 aaKnown RBP9.17□□□□□ -0.94
SYNE1-226ENST00000488376 TRBV25-1A0A075B6N4 114 aa9.17□□□□□ -0.94
SYNE1-226ENST00000488376 IGLV5-52A0A0A0MRZ9 124 aa9.17□□□□□ -0.94
SYNE1-226ENST00000488376 IGHV1-24A0A0C4DH33 117 aa9.17□□□□□ -0.94
SYNE1-226ENST00000488376 XGP55808 180 aa9.17□□□□□ -0.94
SYNE1-226ENST00000488376 ADIRFQ15847 76 aa9.17□□□□□ -0.94
SYNE1-226ENST00000488376 SREK1IP1Q8N9Q2 155 aaPredicted RBP9.17□□□□□ -0.94
SYNE1-226ENST00000488376 GCSHP23434 173 aa9.16□□□□□ -0.94
SYNE1-226ENST00000488376 PEA15Q15121 130 aa9.16□□□□□ -0.94
SYNE1-226ENST00000488376 FAM74A3Q4VXF1 159 aa9.16□□□□□ -0.94
SYNE1-226ENST00000488376 KCNIP4Q6PIL6 250 aa9.16□□□□□ -0.94
SYNE1-226ENST00000488376 GFRA4Q9GZZ7 299 aa9.16□□□□□ -0.94
SYNE1-226ENST00000488376 NAT8Q9UHE5 227 aa9.16□□□□□ -0.94
SYNE1-226ENST00000488376 IGLV4-60A0A075B6I1 120 aa9.15□□□□□ -0.94
SYNE1-226ENST00000488376 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.15□□□□□ -0.94
SYNE1-226ENST00000488376 A0A1B0GUT8 65 aa9.15□□□□□ -0.94
SYNE1-226ENST00000488376 ELOBQ15370 118 aa9.15□□□□□ -0.94
SYNE1-226ENST00000488376 TMEM97Q5BJF2 176 aa9.15□□□□□ -0.94
SYNE1-226ENST00000488376 LINC00269Q8N2A0 174 aa9.15□□□□□ -0.94
SYNE1-226ENST00000488376 NUP35Q8NFH5 326 aa9.15□□□□□ -0.94
SYNE1-226ENST00000488376 RNF185Q96GF1 192 aa9.15□□□□□ -0.94
SYNE1-226ENST00000488376 PCLOQ9Y6V0 5065 aa9.14□□□□□ -0.95
SYNE1-226ENST00000488376 LINC01620Q4KN68 170 aa9.14□□□□□ -0.95
SYNE1-226ENST00000488376 SMIM15Q7Z3B0 74 aa9.14□□□□□ -0.95
SYNE1-226ENST00000488376 C20orf203Q8NBC4 194 aa9.14□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms