RNA–Protein interactions for RNA: ENST00000487880.2

USP48-209, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 524 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-209ENST00000487880 TEN1Q86WV5 123 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 SBSPONQ8IVN8 264 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 ATOH7Q8N100 152 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 OR13C6PQ8NH95 151 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 MYOZ3Q8TDC0 251 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 SPTSSAQ969W0 71 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 BORCS8Q96FH0 119 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 IMUPQ9GZP8 106 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 IDI2-AS1Q9NZ38 188 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 MINOS1-NBL1R4GNA1 71 aa1.75□□□□□ -2.13
USP48-209ENST00000487880 SCN10AQ9Y5Y9 1956 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 OBSL1O75147 1896 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 TRBV6-1A0A0K0K1D8 114 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 TCRBV4S1A1TA0A5B7 111 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 C5orf49A4QMS7 147 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 SMIM9A6NGZ8 99 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 J3KT08 172 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 M0R135 149 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 SNCGO76070 127 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 IGKV1-5P01602 117 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 SLC25A5P05141 298 aaKnown RBP1.74□□□□□ -2.13
USP48-209ENST00000487880 C8orf88P0DMB2 117 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 IAPPP10997 89 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 CD52P31358 61 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 FGF12P61328 243 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 WFDC2Q14508 124 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 RRN3P1Q2M238 152 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 CENPWQ5EE01 88 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 CFAP126Q5VTH2 177 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 AMTNQ6UX39 209 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 SSX8Q7RTT4 187 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 OOSP2Q86WS3 158 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 OR11H6Q8NGC7 330 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 RAB37Q96AX2 223 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 PRELID3AQ96N28 172 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 PRTFDC1Q9NRG1 225 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 KIAA1549LQ6ZVL6 1849 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 CACNA1CQ13936 2221 aa1.74□□□□□ -2.13
USP48-209ENST00000487880 FREM3P0C091 2139 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 IGLV3-32A0A0A0MS00 114 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 IGKV1D-43A0A0B4J1Z2 117 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 TRAV5A0A0B4J249 113 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 LINC01546A6NGU7 62 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 HIGD1CA8MV81 97 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 A8MWV9 139 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 H0YGG7 62 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 H3BRN7 92 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 MT-ATP8P03928 68 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 CLPSP04118 112 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 MGST1P10620 155 aaKnown RBP1.73□□□□□ -2.13
USP48-209ENST00000487880 ORM2P19652 201 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 CRYGSP22914 178 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 FXYD2P54710 66 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 UBE2D3P61077 147 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 UBE2D2P62837 147 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 TNFAIP6P98066 277 aaPredicted RBP1.73□□□□□ -2.13
USP48-209ENST00000487880 PLGLB1Q02325 96 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 TFF3Q07654 80 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 EDDM3AQ14507 147 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 TBC1D28Q2M2D7 210 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 C12orf74Q32Q52 190 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 MRPL51Q4U2R6 128 aaKnown RBP1.73□□□□□ -2.13
USP48-209ENST00000487880 SPRNQ5BIV9 151 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 FAM27BQ5VT28 67 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 Q8IYB0 196 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 IFI27L1Q96BM0 104 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 C20orf78Q9BR46 151 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 AMMECR1Q9Y4X0 333 aaPredicted RBP1.73□□□□□ -2.13
USP48-209ENST00000487880 MPC1Q9Y5U8 109 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 COL4A5P29400 1685 aa1.73□□□□□ -2.13
USP48-209ENST00000487880 HELZ2Q9BYK8 2649 aaKnown RBP1.72□□□□□ -2.13
USP48-209ENST00000487880 SPTBP11277 2137 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 TRBV25-1A0A075B6N4 114 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 TRBV7-7A0A0K0K1E9 115 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 MYMXA0A1B0GTQ4 84 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 C19orf71A6NCJ1 209 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 LINC01549A6NIU2 74 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 M0R2P5 195 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 UQCRQO14949 82 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 OR2H2O95918 312 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 NCR2O95944 276 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 NPYP01303 97 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 HBDP02042 147 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 ACYP1P07311 99 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 SCTP09683 121 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 DLX6P56179 175 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 DSCR4P56555 118 aaPredicted RBP1.72□□□□□ -2.13
USP48-209ENST00000487880 EDDM3BP56851 147 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 PCBD1P61457 104 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 MEIG1Q5JSS6 88 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 GDF5OSQ5U4N7 250 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 LINC00526Q96FQ7 95 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 MGST2Q99735 147 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 RTL8AQ9BWD3 113 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 KRTAP4-1Q9BYQ7 146 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 RNASE7Q9H1E1 156 aaKnown RBP1.72□□□□□ -2.13
USP48-209ENST00000487880 NHP2Q9NX24 153 aaKnown RBP1.72□□□□□ -2.13
USP48-209ENST00000487880 TP73-AS1Q9UF72 201 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 HILPDAQ9Y5L2 63 aa1.72□□□□□ -2.13
USP48-209ENST00000487880 TNRC6AQ8NDV7 1962 aaKnown RBP1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms