RNA–Protein interactions for RNA: ENST00000485397.1

COL27A1-205, Transcript of collagen type XXVII alpha 1 chain, humanhuman

TSL 5

Gene COL27A1, Length 463 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL27A1-205ENST00000485397 HLA-DQA1P01909 254 aa12.46□□□□□ -0.41
COL27A1-205ENST00000485397 S100A9P06702 114 aaKnown RBP12.46□□□□□ -0.41
COL27A1-205ENST00000485397 SPANXN1Q5VSR9 72 aa12.46□□□□□ -0.41
COL27A1-205ENST00000485397 NTM-AS1Q6ZSK4 140 aa12.46□□□□□ -0.41
COL27A1-205ENST00000485397 FAM213BQ8TBF2 198 aa12.46□□□□□ -0.41
COL27A1-205ENST00000485397 OR5AL1P0C617 328 aa12.45□□□□□ -0.42
COL27A1-205ENST00000485397 RGS21Q2M5E4 152 aa12.45□□□□□ -0.42
COL27A1-205ENST00000485397 PRSS1P07477 247 aa12.44□□□□□ -0.42
COL27A1-205ENST00000485397 KCNRGQ8N5I3 272 aa12.44□□□□□ -0.42
COL27A1-205ENST00000485397 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.44□□□□□ -0.42
COL27A1-205ENST00000485397 KIF25-AS1Q9Y6Z4 181 aa12.44□□□□□ -0.42
COL27A1-205ENST00000485397 PFDN1O60925 122 aa12.43□□□□□ -0.42
COL27A1-205ENST00000485397 GAGE6Q13070 117 aa12.43□□□□□ -0.42
COL27A1-205ENST00000485397 MIAQ16674 131 aa12.43□□□□□ -0.42
COL27A1-205ENST00000485397 CLPSL2Q6UWE3 100 aa12.43□□□□□ -0.42
COL27A1-205ENST00000485397 VAX2Q9UIW0 290 aa12.43□□□□□ -0.42
COL27A1-205ENST00000485397 OXTP01178 125 aa12.42□□□□□ -0.42
COL27A1-205ENST00000485397 PKIAP61925 76 aa12.42□□□□□ -0.42
COL27A1-205ENST00000485397 RBX1P62877 108 aa12.42□□□□□ -0.42
COL27A1-205ENST00000485397 TMUB2Q71RG4 321 aa12.42□□□□□ -0.42
COL27A1-205ENST00000485397 DERL1Q9BUN8 251 aa12.42□□□□□ -0.42
COL27A1-205ENST00000485397 PKHD1L1Q86WI1 4243 aa12.42□□□□□ -0.42
COL27A1-205ENST00000485397 UMAD1C9J7I0 102 aa12.41□□□□□ -0.42
COL27A1-205ENST00000485397 TMEM97Q5BJF2 176 aa12.41□□□□□ -0.42
COL27A1-205ENST00000485397 KRTAP26-1Q6PEX3 210 aa12.41□□□□□ -0.42
COL27A1-205ENST00000485397 PRR34Q9NV39 138 aa12.41□□□□□ -0.42
COL27A1-205ENST00000485397 HMCN2Q8NDA2 5059 aa12.41□□□□□ -0.42
COL27A1-205ENST00000485397 SMIM17P0DL12 118 aa12.4□□□□□ -0.42
COL27A1-205ENST00000485397 RPL37AP61513 92 aaKnown RBP12.4□□□□□ -0.42
COL27A1-205ENST00000485397 ZNF345Q14585 488 aa12.4□□□□□ -0.42
COL27A1-205ENST00000485397 SERTAD4-AS1Q5TG53 156 aa12.4□□□□□ -0.42
COL27A1-205ENST00000485397 LINC00269Q8N2A0 174 aa12.4□□□□□ -0.42
COL27A1-205ENST00000485397 H2AFB1P0C5Y9 115 aa12.39□□□□□ -0.43
COL27A1-205ENST00000485397 GZMBP10144 247 aa12.39□□□□□ -0.43
COL27A1-205ENST00000485397 DGAT2L7PQ6IED9 249 aa12.39□□□□□ -0.43
COL27A1-205ENST00000485397 C9orf163Q8N9P6 203 aa12.39□□□□□ -0.43
COL27A1-205ENST00000485397 AP1S3Q96PC3 154 aa12.39□□□□□ -0.43
COL27A1-205ENST00000485397 TRBV25-1A0A075B6N4 114 aa12.38□□□□□ -0.43
COL27A1-205ENST00000485397 RPL35P42766 123 aaKnown RBP12.38□□□□□ -0.43
COL27A1-205ENST00000485397 HNRNPA3P51991 378 aaKnown RBP12.38□□□□□ -0.43
COL27A1-205ENST00000485397 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP12.38□□□□□ -0.43
COL27A1-205ENST00000485397 PANO1I0J062 215 aa12.37□□□□□ -0.43
COL27A1-205ENST00000485397 MGPP08493 103 aa12.37□□□□□ -0.43
COL27A1-205ENST00000485397 IQCJQ1A5X6 159 aa12.37□□□□□ -0.43
COL27A1-205ENST00000485397 DAZAP1Q96EP5 407 aaKnown RBP12.37□□□□□ -0.43
COL27A1-205ENST00000485397 TPPP3Q9BW30 176 aa12.37□□□□□ -0.43
COL27A1-205ENST00000485397 IGLV10-54A0A075B6I4 117 aa12.36□□□□□ -0.43
COL27A1-205ENST00000485397 M0QY20 66 aa12.36□□□□□ -0.43
COL27A1-205ENST00000485397 BCL2L11O43521 198 aa12.36□□□□□ -0.43
COL27A1-205ENST00000485397 CCL20P78556 96 aa12.36□□□□□ -0.43
COL27A1-205ENST00000485397 IGHV1-24A0A0C4DH33 117 aa12.35□□□□□ -0.43
COL27A1-205ENST00000485397 A0A0D9SG52 128 aa12.35□□□□□ -0.43
COL27A1-205ENST00000485397 KANTRA0A1W2PQU2 76 aa12.35□□□□□ -0.43
COL27A1-205ENST00000485397 HMSDA8MTL9 139 aa12.35□□□□□ -0.43
COL27A1-205ENST00000485397 IGLC6P0CF74 106 aa12.35□□□□□ -0.43
COL27A1-205ENST00000485397 SUMO4Q6EEV6 95 aa12.35□□□□□ -0.43
COL27A1-205ENST00000485397 REG3AQ06141 175 aa12.34□□□□□ -0.43
COL27A1-205ENST00000485397 CENPWQ5EE01 88 aa12.34□□□□□ -0.43
COL27A1-205ENST00000485397 SDIM1Q6ZPB5 146 aa12.34□□□□□ -0.43
COL27A1-205ENST00000485397 FER1L6-AS1Q8NA97 138 aa12.34□□□□□ -0.43
COL27A1-205ENST00000485397 C20orf203Q8NBC4 194 aa12.34□□□□□ -0.43
COL27A1-205ENST00000485397 OR2D3Q8NGH3 330 aa12.34□□□□□ -0.43
COL27A1-205ENST00000485397 C11orf52Q96A22 123 aa12.34□□□□□ -0.43
COL27A1-205ENST00000485397 GNG13Q9P2W3 67 aa12.34□□□□□ -0.43
COL27A1-205ENST00000485397 H7C1H1 209 aa12.32□□□□□ -0.44
COL27A1-205ENST00000485397 NKX2-5P52952 324 aaPredicted RBP12.32□□□□□ -0.44
COL27A1-205ENST00000485397 CLRN3Q8NCR9 226 aa12.32□□□□□ -0.44
COL27A1-205ENST00000485397 GFRA4Q9GZZ7 299 aa12.32□□□□□ -0.44
COL27A1-205ENST00000485397 MANBALQ9NQG1 85 aa12.32□□□□□ -0.44
COL27A1-205ENST00000485397 IGLV4-60A0A075B6I1 120 aa12.31□□□□□ -0.44
COL27A1-205ENST00000485397 RAB19A4D1S5 217 aa12.31□□□□□ -0.44
COL27A1-205ENST00000485397 C19orf71A6NCJ1 209 aa12.31□□□□□ -0.44
COL27A1-205ENST00000485397 RPS20P60866 119 aaKnown RBP12.31□□□□□ -0.44
COL27A1-205ENST00000485397 CACNG7P62955 275 aa12.31□□□□□ -0.44
COL27A1-205ENST00000485397 hDV102S1A0JD36 115 aa12.3□□□□□ -0.44
COL27A1-205ENST00000485397 EIF5AP63241 154 aaKnown RBP12.3□□□□□ -0.44
COL27A1-205ENST00000485397 TMEM243Q9BU79 118 aa12.3□□□□□ -0.44
COL27A1-205ENST00000485397 PLA2G2DQ9UNK4 145 aa12.3□□□□□ -0.44
COL27A1-205ENST00000485397 RAB5CP51148 216 aa12.29□□□□□ -0.44
COL27A1-205ENST00000485397 CNBPP62633 177 aaKnown RBP12.29□□□□□ -0.44
COL27A1-205ENST00000485397 RASL11AQ6T310 242 aa12.29□□□□□ -0.44
COL27A1-205ENST00000485397 TRAV8-4A0A0B4J246 113 aa12.28□□□□□ -0.44
COL27A1-205ENST00000485397 TRAV1-1A0A0B4J248 108 aa12.28□□□□□ -0.44
COL27A1-205ENST00000485397 A0A1B0GUV1 79 aa12.28□□□□□ -0.44
COL27A1-205ENST00000485397 P01737 135 aa12.28□□□□□ -0.44
COL27A1-205ENST00000485397 SLPIP03973 132 aa12.28□□□□□ -0.44
COL27A1-205ENST00000485397 UBR4Q5T4S7 5183 aa12.28□□□□□ -0.44
COL27A1-205ENST00000485397 GNG4P50150 75 aa12.27□□□□□ -0.45
COL27A1-205ENST00000485397 CIRBPQ14011 172 aaKnown RBP12.27□□□□□ -0.45
COL27A1-205ENST00000485397 LYZL1Q6UWQ5 148 aa12.27□□□□□ -0.45
COL27A1-205ENST00000485397 NIT2Q9NQR4 276 aa12.27□□□□□ -0.45
COL27A1-205ENST00000485397 F2Z2F3 143 aa12.26□□□□□ -0.45
COL27A1-205ENST00000485397 DPH3P1Q9H4G8 78 aa12.26□□□□□ -0.45
COL27A1-205ENST00000485397 TRBV20OR9-2A0A075B6H5 130 aa12.25□□□□□ -0.45
COL27A1-205ENST00000485397 XKRY2A2RUG3 117 aa12.25□□□□□ -0.45
COL27A1-205ENST00000485397 IFNA1P01562 189 aa12.25□□□□□ -0.45
COL27A1-205ENST00000485397 TRGC1P0CF51 173 aa12.25□□□□□ -0.45
COL27A1-205ENST00000485397 CHTF8P0CG12 524 aa12.25□□□□□ -0.45
COL27A1-205ENST00000485397 NTF3P20783 257 aa12.25□□□□□ -0.45
COL27A1-205ENST00000485397 PGLYRP4Q96LB8 373 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 429.2 ms