RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 SPATA12Q7Z6I5 190 aa6.81□□□□□ -1.32
SYNE1-224ENST00000478916 NRGNQ92686 78 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 TEX22C9J3V5 150 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 SPRY2O43597 315 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 HIST2H2BDQ6DRA6 164 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 LYPD6Q86Y78 171 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 KRTAP27-1Q3LI81 207 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 FBXL19-AS1Q494R0 122 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 GTSF1Q8WW33 167 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 TMEM89A2RUT3 159 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 C4orf3Q8WVX3 66 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 MSRB1Q9NZV6 116 aa6.8□□□□□ -1.32
SYNE1-224ENST00000478916 C5orf56Q8N8D9 126 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 A6NED7 52 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 APRG1Q8IVJ8 170 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 MED14OSP0DP75 135 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 SPRNQ5BIV9 151 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 LRRC75A-AS1Q8N1F1 130 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 KLK5Q9Y337 293 aaPredicted RBP6.79□□□□□ -1.32
SYNE1-224ENST00000478916 CACNA1HO95180 2353 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 TEX49A0A1B0GTD5 131 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 NDUFA7O95182 113 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 IGHV3-30P01768 117 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 IGHV3-33P01772 117 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 IGHV3-30-3P0DP02 117 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 IGHV3-30-5P0DP03 117 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 WFDC11Q8NEX6 87 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 AJUBAQ96IF1 538 aa6.79□□□□□ -1.32
SYNE1-224ENST00000478916 CTRLP40313 264 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 BLCAPP62952 87 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 NFE4Q86UQ8 179 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 NBASA2RRP1 2371 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 NOTCH4Q99466 2003 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 IGLV2-23P01705 113 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 IL17DQ8TAD2 202 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 SPRY4Q9C004 299 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 SPAG11BQ08648 103 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 ENHOQ6UWT2 76 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 FANCD2OSQ96PS1 177 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 IGLV11-55A0A075B6I3 123 aa6.78□□□□□ -1.32
SYNE1-224ENST00000478916 INSL3P51460 131 aa6.77□□□□□ -1.32
SYNE1-224ENST00000478916 TM2D2Q9BX73 214 aa6.77□□□□□ -1.32
SYNE1-224ENST00000478916 PIK3CD-AS1Q5SR53 167 aa6.77□□□□□ -1.33
SYNE1-224ENST00000478916 B9D2Q9BPU9 175 aa6.77□□□□□ -1.33
SYNE1-224ENST00000478916 SMAD5-AS1Q9Y6J3 95 aa6.77□□□□□ -1.33
SYNE1-224ENST00000478916 A0A1W2PNU3 283 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-224ENST00000478916 LOXL1Q08397 574 aaPredicted RBP6.77□□□□□ -1.33
SYNE1-224ENST00000478916 LYRM9A8MSI8 78 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 F8W735 103 aaPredicted RBP6.76□□□□□ -1.33
SYNE1-224ENST00000478916 I3L2K1 104 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 SERP2Q8N6R1 65 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 HHLA3Q9XRX5 114 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 TIMM17BO60830 172 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 IMUPQ9GZP8 106 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 MDFICQ9P1T7 246 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 Q8N9W7 124 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 NOTCH3Q9UM47 2321 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 DSCAML1Q8TD84 2053 aa6.76□□□□□ -1.33
SYNE1-224ENST00000478916 C2orf70A6NJV1 201 aa6.75□□□□□ -1.33
SYNE1-224ENST00000478916 ZFP36P26651 326 aaKnown RBP6.75□□□□□ -1.33
SYNE1-224ENST00000478916 KIF26AQ9ULI4 1882 aaPredicted RBP6.75□□□□□ -1.33
SYNE1-224ENST00000478916 SPTAN1Q13813 2472 aaKnown RBP6.75□□□□□ -1.33
SYNE1-224ENST00000478916 K7EMT4 169 aa6.75□□□□□ -1.33
SYNE1-224ENST00000478916 Q8NA96 180 aa6.75□□□□□ -1.33
SYNE1-224ENST00000478916 K7EIM0 57 aa6.75□□□□□ -1.33
SYNE1-224ENST00000478916 SHANK1Q9Y566 2161 aa6.75□□□□□ -1.33
SYNE1-224ENST00000478916 MUC6Q6W4X9 2439 aa6.75□□□□□ -1.33
SYNE1-224ENST00000478916 TRBV6-1A0A0K0K1D8 114 aa6.75□□□□□ -1.33
SYNE1-224ENST00000478916 A0A0J9YXY3 114 aa6.74□□□□□ -1.33
SYNE1-224ENST00000478916 DNAJC9-AS1A6NH13 148 aa6.74□□□□□ -1.33
SYNE1-224ENST00000478916 GPHB5Q86YW7 130 aa6.74□□□□□ -1.33
SYNE1-224ENST00000478916 CTSGP08311 255 aa6.74□□□□□ -1.33
SYNE1-224ENST00000478916 FAM167A-AS1Q96KT0 104 aa6.74□□□□□ -1.33
SYNE1-224ENST00000478916 SIRPDQ9H106 197 aa6.74□□□□□ -1.33
SYNE1-224ENST00000478916 Q6ZSR3 168 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 P0DMU3 169 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 FAM231AP0DMU4 169 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 FAM231CP0DMU5 169 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 PATE2Q6UY27 113 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 SCXQ7RTU7 201 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 ZFHX2Q9C0A1 2572 aaPredicted RBP6.73□□□□□ -1.33
SYNE1-224ENST00000478916 RITA1Q96K30 269 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 Q8N7P7 452 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 PLA2G2EQ9NZK7 142 aa6.73□□□□□ -1.33
SYNE1-224ENST00000478916 COX7CP15954 63 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 C20orf203Q8NBC4 194 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 SERP1Q9Y6X1 66 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 LTBP2Q14767 1821 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 WFDC10BQ8IUB3 73 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 SNURFQ9Y675 71 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 UFSP1Q6NVU6 142 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 TMEM263Q8WUH6 116 aaKnown RBP6.72□□□□□ -1.33
SYNE1-224ENST00000478916 DEFB135Q30KP9 77 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 A6NDX4 124 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 FAM19A3Q7Z5A8 133 aa6.72□□□□□ -1.33
SYNE1-224ENST00000478916 PCNX1Q96RV3 2341 aa6.71□□□□□ -1.33
SYNE1-224ENST00000478916 IGKV1-17P01599 117 aa6.71□□□□□ -1.33
SYNE1-224ENST00000478916 TNFRSF13BO14836 293 aaPredicted RBP6.71□□□□□ -1.33
SYNE1-224ENST00000478916 SMIM26A0A096LP01 95 aa6.71□□□□□ -1.34
SYNE1-224ENST00000478916 TRBV30A0A0K0K1B3 111 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms