RNA–Protein interactions for RNA: ENST00000473191.1

USP40-212, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 590 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-212ENST00000473191 Q6ZSA8 131 aa10.93□□□□□ -0.66
USP40-212ENST00000473191 TMEM262E9PQX1 116 aa10.92□□□□□ -0.66
USP40-212ENST00000473191 F5H697 171 aa10.92□□□□□ -0.66
USP40-212ENST00000473191 SLC51BQ86UW2 128 aa10.92□□□□□ -0.66
USP40-212ENST00000473191 MANBALQ9NQG1 85 aa10.92□□□□□ -0.66
USP40-212ENST00000473191 TRBV20OR9-2A0A075B6H5 130 aa10.91□□□□□ -0.66
USP40-212ENST00000473191 TRAV1-1A0A0B4J248 108 aa10.91□□□□□ -0.66
USP40-212ENST00000473191 C19orf71A6NCJ1 209 aa10.91□□□□□ -0.66
USP40-212ENST00000473191 IGLC6P0CF74 106 aa10.91□□□□□ -0.66
USP40-212ENST00000473191 ATRAIDQ6UW56 229 aa10.91□□□□□ -0.66
USP40-212ENST00000473191 C15orf54Q8N8G6 183 aa10.91□□□□□ -0.66
USP40-212ENST00000473191 Q8N976 141 aa10.91□□□□□ -0.66
USP40-212ENST00000473191 TPPP3Q9BW30 176 aa10.91□□□□□ -0.66
USP40-212ENST00000473191 FAM229AH3BQW9 127 aa10.9□□□□□ -0.66
USP40-212ENST00000473191 SULT1A2P50226 295 aa10.9□□□□□ -0.66
USP40-212ENST00000473191 OR2D3Q8NGH3 330 aa10.89□□□□□ -0.67
USP40-212ENST00000473191 DEFB104AQ8WTQ1 72 aa10.89□□□□□ -0.67
USP40-212ENST00000473191 CHCHD7Q9BUK0 85 aa10.89□□□□□ -0.67
USP40-212ENST00000473191 COX11Q9Y6N1 276 aa10.89□□□□□ -0.67
USP40-212ENST00000473191 MGPP08493 103 aa10.88□□□□□ -0.67
USP40-212ENST00000473191 CLPSL2Q6UWE3 100 aa10.88□□□□□ -0.67
USP40-212ENST00000473191 SCXQ7RTU7 201 aa10.88□□□□□ -0.67
USP40-212ENST00000473191 FER1L6-AS1Q8NA97 138 aa10.88□□□□□ -0.67
USP40-212ENST00000473191 RMI2Q96E14 147 aa10.88□□□□□ -0.67
USP40-212ENST00000473191 CHCHD5Q9BSY4 110 aa10.88□□□□□ -0.67
USP40-212ENST00000473191 SRRM2Q9UQ35 2752 aaKnown RBP10.88□□□□□ -0.67
USP40-212ENST00000473191 M0QY20 66 aa10.87□□□□□ -0.67
USP40-212ENST00000473191 ANGP03950 147 aaKnown RBP10.87□□□□□ -0.67
USP40-212ENST00000473191 RAB5CP51148 216 aa10.87□□□□□ -0.67
USP40-212ENST00000473191 MEF2BQ02080 365 aaPredicted RBP10.87□□□□□ -0.67
USP40-212ENST00000473191 GAGE6Q13070 117 aa10.87□□□□□ -0.67
USP40-212ENST00000473191 SUMO4Q6EEV6 95 aa10.87□□□□□ -0.67
USP40-212ENST00000473191 EIF5AL1Q6IS14 154 aaKnown RBP10.87□□□□□ -0.67
USP40-212ENST00000473191 KCNIP4Q6PIL6 250 aa10.87□□□□□ -0.67
USP40-212ENST00000473191 AP1S3Q96PC3 154 aa10.87□□□□□ -0.67
USP40-212ENST00000473191 VAX2Q9UIW0 290 aa10.87□□□□□ -0.67
USP40-212ENST00000473191 GNG4P50150 75 aa10.86□□□□□ -0.67
USP40-212ENST00000473191 ELOBQ15370 118 aa10.86□□□□□ -0.67
USP40-212ENST00000473191 LINC00528Q8N1L1 170 aa10.86□□□□□ -0.67
USP40-212ENST00000473191 MED9Q9NWA0 146 aa10.86□□□□□ -0.67
USP40-212ENST00000473191 SMIM17P0DL12 118 aa10.85□□□□□ -0.67
USP40-212ENST00000473191 BCL2P10415 239 aa10.85□□□□□ -0.67
USP40-212ENST00000473191 Q0VG73 95 aa10.85□□□□□ -0.67
USP40-212ENST00000473191 LYZL1Q6UWQ5 148 aa10.85□□□□□ -0.67
USP40-212ENST00000473191 DAZAP1Q96EP5 407 aaKnown RBP10.85□□□□□ -0.67
USP40-212ENST00000473191 C1orf43Q9BWL3 253 aa10.85□□□□□ -0.67
USP40-212ENST00000473191 FLG2Q5D862 2391 aaPredicted RBP10.85□□□□□ -0.67
USP40-212ENST00000473191 HLA-DQA1P01909 254 aa10.84□□□□□ -0.67
USP40-212ENST00000473191 CRPP02741 224 aa10.84□□□□□ -0.67
USP40-212ENST00000473191 RBX1P62877 108 aa10.84□□□□□ -0.67
USP40-212ENST00000473191 KRTAP26-1Q6PEX3 210 aa10.84□□□□□ -0.67
USP40-212ENST00000473191 TEX261Q6UWH6 196 aa10.84□□□□□ -0.67
USP40-212ENST00000473191 K7EN84 100 aa10.83□□□□□ -0.68
USP40-212ENST00000473191 PDE6DO43924 150 aa10.83□□□□□ -0.68
USP40-212ENST00000473191 P01737 135 aa10.83□□□□□ -0.68
USP40-212ENST00000473191 ALKAL2Q6UX46 152 aa10.83□□□□□ -0.68
USP40-212ENST00000473191 LINC00269Q8N2A0 174 aa10.83□□□□□ -0.68
USP40-212ENST00000473191 NUDT10Q8NFP7 164 aa10.83□□□□□ -0.68
USP40-212ENST00000473191 NUDT11Q96G61 164 aa10.83□□□□□ -0.68
USP40-212ENST00000473191 USP17L23D6RBM5 183 aa10.82□□□□□ -0.68
USP40-212ENST00000473191 NTF3P20783 257 aa10.82□□□□□ -0.68
USP40-212ENST00000473191 RPS20P60866 119 aaKnown RBP10.82□□□□□ -0.68
USP40-212ENST00000473191 CIRBP-AS1Q8TBR5 109 aa10.82□□□□□ -0.68
USP40-212ENST00000473191 RNASE7Q9H1E1 156 aaKnown RBP10.82□□□□□ -0.68
USP40-212ENST00000473191 PRR34Q9NV39 138 aa10.82□□□□□ -0.68
USP40-212ENST00000473191 TRBV25-1A0A075B6N4 114 aa10.81□□□□□ -0.68
USP40-212ENST00000473191 TEX46H3BTG2 121 aa10.81□□□□□ -0.68
USP40-212ENST00000473191 PRSS1P07477 247 aa10.81□□□□□ -0.68
USP40-212ENST00000473191 KRTAP10-4P60372 401 aaPredicted RBP10.81□□□□□ -0.68
USP40-212ENST00000473191 CACNG7P62955 275 aa10.81□□□□□ -0.68
USP40-212ENST00000473191 IQCJQ1A5X6 159 aa10.81□□□□□ -0.68
USP40-212ENST00000473191 SMIM12Q96EX1 92 aa10.81□□□□□ -0.68
USP40-212ENST00000473191 GFRA4Q9GZZ7 299 aa10.81□□□□□ -0.68
USP40-212ENST00000473191 IGLV4-60A0A075B6I1 120 aa10.8□□□□□ -0.68
USP40-212ENST00000473191 IGLV10-54A0A075B6I4 117 aa10.8□□□□□ -0.68
USP40-212ENST00000473191 IFNA1P01562 189 aa10.8□□□□□ -0.68
USP40-212ENST00000473191 IFITM2Q01629 132 aa10.8□□□□□ -0.68
USP40-212ENST00000473191 C20orf203Q8NBC4 194 aa10.8□□□□□ -0.68
USP40-212ENST00000473191 OCC1Q8TAD7 63 aa10.8□□□□□ -0.68
USP40-212ENST00000473191 CHAC1Q9BUX1 264 aa10.8□□□□□ -0.68
USP40-212ENST00000473191 IGHV1-24A0A0C4DH33 117 aa10.79□□□□□ -0.68
USP40-212ENST00000473191 CTRLP40313 264 aa10.79□□□□□ -0.68
USP40-212ENST00000473191 MIAQ16674 131 aa10.79□□□□□ -0.68
USP40-212ENST00000473191 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.79□□□□□ -0.68
USP40-212ENST00000473191 TRAV26-2A0A0B4J265 109 aa10.78□□□□□ -0.68
USP40-212ENST00000473191 F2Z2F3 143 aa10.78□□□□□ -0.68
USP40-212ENST00000473191 FOXA3P55318 350 aaPredicted RBP10.78□□□□□ -0.68
USP40-212ENST00000473191 RAB14P61106 215 aa10.78□□□□□ -0.68
USP40-212ENST00000473191 TMEM97Q5BJF2 176 aa10.78□□□□□ -0.68
USP40-212ENST00000473191 RASL11AQ6T310 242 aa10.78□□□□□ -0.68
USP40-212ENST00000473191 GTSF1Q8WW33 167 aa10.78□□□□□ -0.68
USP40-212ENST00000473191 LRP1Q07954 4544 aaKnown RBP10.78□□□□□ -0.68
USP40-212ENST00000473191 PANO1I0J062 215 aa10.77□□□□□ -0.69
USP40-212ENST00000473191 PLA2G1BP04054 148 aaKnown RBP10.77□□□□□ -0.69
USP40-212ENST00000473191 REG3AQ06141 175 aa10.77□□□□□ -0.69
USP40-212ENST00000473191 DPH3P1Q9H4G8 78 aa10.77□□□□□ -0.69
USP40-212ENST00000473191 XKRY2A2RUG3 117 aa10.76□□□□□ -0.69
USP40-212ENST00000473191 H7C1H1 209 aa10.76□□□□□ -0.69
USP40-212ENST00000473191 TRGC1P0CF51 173 aa10.76□□□□□ -0.69
USP40-212ENST00000473191 TWIST1Q15672 202 aa10.76□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms