RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 DYSFO75923 2080 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV6-1A0A0B4J1U7 121 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 A0A0G2JRQ6 117 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 H3BMM0 161 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 MGST1P10620 155 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 LINC01554Q52M75 96 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 C7orf65Q6ZTY9 151 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 ITLN1Q8WWA0 313 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 ITLN2Q8WWU7 325 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 UBE2WQ96B02 151 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 ZNF524Q96C55 264 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 ZNF706Q9Y5V0 76 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 RTTNQ86VV8 2226 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 DOCK7Q96N67 2140 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 TRBV25-1A0A075B6N4 114 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 TRAV16A0A0A6YYK6 109 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 C12orf77C9JDV5 145 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 PSPHP1O15172 72 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 NCBP2P52298 156 aaKnown RBP eCLIP3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 KRTAP10-9P60411 292 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 GDF5OSQ5U4N7 250 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 NUP37Q8NFH4 326 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 CHCHD10Q8WYQ3 142 aaPredicted RBP3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 SPTSSAQ969W0 71 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 NPCDR1Q9BY65 106 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 PROK2Q9HC23 129 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 MTORP42345 2549 aa3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 ANKHD1Q8IWZ3 2542 aaKnown RBP3.5□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV4-38-2P0DP08 117 aa3.49□□□□□ -1.85
CCDC88A-209ENST00000456975 ZNF22P17026 224 aaPredicted RBP3.49□□□□□ -1.85
CCDC88A-209ENST00000456975 FUSP35637 526 aaKnown RBP eCLIP3.49□□□□□ -1.85
CCDC88A-209ENST00000456975 BLCAPP62952 87 aa3.49□□□□□ -1.85
CCDC88A-209ENST00000456975 SUPT4H1P63272 117 aaKnown RBP3.49□□□□□ -1.85
CCDC88A-209ENST00000456975 ZNF117Q03924 483 aa3.49□□□□□ -1.85
CCDC88A-209ENST00000456975 SPINK14Q6IE38 97 aa3.49□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV4OR15-8A0A075B7B6 117 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 TRBV7-1A0A0A6YYK4 115 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV1-69DA0A0B4J2H0 117 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV4-61A0A0C4DH41 118 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 COX7A2P2O60397 106 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 PPYP01298 95 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV4-59P01825 116 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 IGKV1-16P04430 117 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 RNASE4P34096 147 aaKnown RBP3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 XCL1P47992 114 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 FXYD6P3P58550 94 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 KIAA0087Q14695 138 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 RHOHQ15669 191 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 KISS1Q15726 138 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 ZNF714Q96N38 554 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 XCL2Q9UBD3 114 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 NCOA6Q14686 2063 aaPredicted RBP3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 IGKV1-27A0A075B6S5 117 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 PINLYPA6NC86 204 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 IQCF6A8MYZ5 107 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 PEX7O00628 323 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 CCL3P10147 92 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 NPPCP23582 126 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 S100A3P33764 101 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 CRYBA2P53672 197 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 MDP1Q86V88 176 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 CLECL1Q8IZS7 167 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 Q8N1X5 172 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 ZNRF1Q8ND25 227 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 KIAA1549Q9HCM3 1950 aa3.48□□□□□ -1.85
CCDC88A-209ENST00000456975 IGKV1D-17A0A075B6S4 117 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 LINC01549A6NIU2 74 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 A6NN06 94 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 K7EMI3 77 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 IGHV3-9P01782 118 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 HMGN2P05204 90 aaKnown RBP3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 REG3AQ06141 175 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 PRAC1Q96KF2 57 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 BPESC1Q9GZL8 116 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 TRBV7-3A0A075B6L6 115 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 TRBV10-2A0A0K0K1G8 114 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 CXCL6P80162 114 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 SERF2P84101 59 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 NNATQ16517 81 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 Q1T7F1 81 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 FBXL19-AS1Q494R0 122 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 ATP11AUNQ6ZP68 121 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 SLC25A29Q8N8R3 303 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 TTTY12Q9BZ98 90 aa3.47□□□□□ -1.85
CCDC88A-209ENST00000456975 PRRC2CQ9Y520 2896 aaKnown RBP3.46□□□□□ -1.85
CCDC88A-209ENST00000456975 IGLV3-32A0A0A0MS00 114 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 TRGV8A0A0C4DH27 118 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 E7EQL1 145 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 PIN1P1O15428 100 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 PRM2P04554 102 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 CKS2P33552 79 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 UBE2D1P51668 147 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 MFAP2P55001 183 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 IFI27L1Q96BM0 104 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 HIST1H4GQ99525 98 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 SLC25A2Q9BXI2 301 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 DYNLRB1Q9NP97 96 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 SPRR3Q9UBC9 169 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 V9GYV3 84 aa3.46□□□□□ -1.86
CCDC88A-209ENST00000456975 PRRC2AP48634 2157 aaKnown RBP3.46□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms