RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 LAGE3Q14657 143 aa11.67□□□□□ -0.54
USP39-208ENST00000455732 FAM74A3Q4VXF1 159 aa11.67□□□□□ -0.54
USP39-208ENST00000455732 SPATA12Q7Z6I5 190 aa11.67□□□□□ -0.54
USP39-208ENST00000455732 DNAH5Q8TE73 4624 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 H7C1H1 209 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 M0QY20 66 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 IGHV3-30P01768 117 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 IGHV3-33P01772 117 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 IGHV3-30-3P0DP02 117 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 IGHV3-30-5P0DP03 117 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 KRTAP10-2P60368 255 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 PEA15Q15121 130 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 DPH3P1Q9H4G8 78 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 OSTCQ9NRP0 149 aa11.66□□□□□ -0.54
USP39-208ENST00000455732 C9JQL5 133 aa11.65□□□□□ -0.54
USP39-208ENST00000455732 MGPP08493 103 aa11.65□□□□□ -0.54
USP39-208ENST00000455732 FOXA3P55318 350 aaPredicted RBP11.65□□□□□ -0.54
USP39-208ENST00000455732 SUMO4Q6EEV6 95 aa11.65□□□□□ -0.54
USP39-208ENST00000455732 SREK1IP1Q8N9Q2 155 aaPredicted RBP11.65□□□□□ -0.54
USP39-208ENST00000455732 DNAJC30Q96LL9 226 aa11.65□□□□□ -0.54
USP39-208ENST00000455732 ABCA13Q86UQ4 5058 aa11.65□□□□□ -0.54
USP39-208ENST00000455732 HSPG2P98160 4391 aa11.64□□□□□ -0.55
USP39-208ENST00000455732 TRBV6-8A0A0A6YYG3 113 aa11.64□□□□□ -0.55
USP39-208ENST00000455732 TWIST1Q15672 202 aa11.64□□□□□ -0.55
USP39-208ENST00000455732 DAZ4Q86SG3 579 aaKnown RBP11.64□□□□□ -0.55
USP39-208ENST00000455732 NIT1Q86X76 327 aa11.64□□□□□ -0.55
USP39-208ENST00000455732 Q8N3U1 123 aa11.64□□□□□ -0.55
USP39-208ENST00000455732 CHCHD7Q9BUK0 85 aa11.64□□□□□ -0.55
USP39-208ENST00000455732 GFRA4Q9GZZ7 299 aa11.64□□□□□ -0.55
USP39-208ENST00000455732 DAZ3Q9NR90 486 aaKnown RBP11.64□□□□□ -0.55
USP39-208ENST00000455732 FAM231BA6NCW3 169 aa11.63□□□□□ -0.55
USP39-208ENST00000455732 SRSF3P84103 164 aaKnown RBP11.63□□□□□ -0.55
USP39-208ENST00000455732 TMEM241Q24JQ0 296 aa11.63□□□□□ -0.55
USP39-208ENST00000455732 TMEM97Q5BJF2 176 aa11.63□□□□□ -0.55
USP39-208ENST00000455732 TSKUQ8WUA8 353 aa11.63□□□□□ -0.55
USP39-208ENST00000455732 ISOC2Q96AB3 205 aa11.62□□□□□ -0.55
USP39-208ENST00000455732 NAT8Q9UHE5 227 aa11.62□□□□□ -0.55
USP39-208ENST00000455732 A0A087WTM6 91 aa11.61□□□□□ -0.55
USP39-208ENST00000455732 CDK2AP2O75956 126 aa11.61□□□□□ -0.55
USP39-208ENST00000455732 RPL23P62829 140 aaKnown RBP11.61□□□□□ -0.55
USP39-208ENST00000455732 RASL11AQ6T310 242 aa11.61□□□□□ -0.55
USP39-208ENST00000455732 C15orf54Q8N8G6 183 aa11.61□□□□□ -0.55
USP39-208ENST00000455732 URGCP-MRPS24S4R325 110 aa11.61□□□□□ -0.55
USP39-208ENST00000455732 APOBP04114 4563 aaKnown RBP11.6□□□□□ -0.55
USP39-208ENST00000455732 EREGO14944 169 aa11.6□□□□□ -0.55
USP39-208ENST00000455732 SMIM15Q7Z3B0 74 aa11.6□□□□□ -0.55
USP39-208ENST00000455732 FRZBQ92765 325 aa11.6□□□□□ -0.55
USP39-208ENST00000455732 PGLYRP4Q96LB8 373 aa11.6□□□□□ -0.55
USP39-208ENST00000455732 Q9HAA7 133 aa11.6□□□□□ -0.55
USP39-208ENST00000455732 V9GYV3 84 aa11.6□□□□□ -0.55
USP39-208ENST00000455732 A0A087WX48 190 aa11.59□□□□□ -0.55
USP39-208ENST00000455732 TRAV8-3A0A0A6YYJ7 113 aa11.59□□□□□ -0.55
USP39-208ENST00000455732 HIGD1CA8MV81 97 aa11.59□□□□□ -0.55
USP39-208ENST00000455732 PKIAP61925 76 aa11.59□□□□□ -0.55
USP39-208ENST00000455732 NTM-AS1Q6ZSK4 140 aa11.59□□□□□ -0.55
USP39-208ENST00000455732 BORCS7Q96B45 105 aa11.59□□□□□ -0.55
USP39-208ENST00000455732 NIT2Q9NQR4 276 aa11.59□□□□□ -0.55
USP39-208ENST00000455732 RAB14P61106 215 aa11.58□□□□□ -0.56
USP39-208ENST00000455732 ELOBQ15370 118 aa11.58□□□□□ -0.56
USP39-208ENST00000455732 ADIRFQ15847 76 aa11.58□□□□□ -0.56
USP39-208ENST00000455732 IQCJQ1A5X6 159 aa11.58□□□□□ -0.56
USP39-208ENST00000455732 KCNIP4Q6PIL6 250 aa11.58□□□□□ -0.56
USP39-208ENST00000455732 TM2D2Q9BX73 214 aa11.58□□□□□ -0.56
USP39-208ENST00000455732 A0A1B0GUT8 65 aa11.57□□□□□ -0.56
USP39-208ENST00000455732 PSCAO43653 123 aa11.57□□□□□ -0.56
USP39-208ENST00000455732 CDPF1Q6NVV7 123 aa11.57□□□□□ -0.56
USP39-208ENST00000455732 GATD1Q8NB37 220 aa11.57□□□□□ -0.56
USP39-208ENST00000455732 PGPEP1Q9NXJ5 209 aa11.57□□□□□ -0.56
USP39-208ENST00000455732 TRBV25-1A0A075B6N4 114 aa11.56□□□□□ -0.56
USP39-208ENST00000455732 LRCOL1A6NCL2 159 aa11.56□□□□□ -0.56
USP39-208ENST00000455732 KRTAP4-5Q9BYR2 181 aa11.56□□□□□ -0.56
USP39-208ENST00000455732 MAPKAPK5-AS1Q8N8E1 139 aa11.55□□□□□ -0.56
USP39-208ENST00000455732 CHCHD5Q9BSY4 110 aa11.55□□□□□ -0.56
USP39-208ENST00000455732 KLK12Q9UKR0 248 aa11.55□□□□□ -0.56
USP39-208ENST00000455732 COX11Q9Y6N1 276 aa11.55□□□□□ -0.56
USP39-208ENST00000455732 TRAV26-2A0A0B4J265 109 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 IGHV1-24A0A0C4DH33 117 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 TMEM262E9PQX1 116 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 FUSP35637 526 aaKnown RBP eCLIP11.54□□□□□ -0.56
USP39-208ENST00000455732 MPV17L2Q567V2 206 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 CLLU1Q5K131 121 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 ATRAIDQ6UW56 229 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 NUP35Q8NFH5 326 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 RMI2Q96E14 147 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 TMEM191AQ9H0A3 160 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 NAT8BQ9UHF3 227 aa11.54□□□□□ -0.56
USP39-208ENST00000455732 SMIM27A0A1W2PRY6 76 aa11.52□□□□□ -0.57
USP39-208ENST00000455732 Q0VG73 95 aa11.52□□□□□ -0.57
USP39-208ENST00000455732 RIGQ13278 110 aa11.52□□□□□ -0.57
USP39-208ENST00000455732 UBE2WQ96B02 151 aa11.52□□□□□ -0.57
USP39-208ENST00000455732 RPL39LQ96EH5 51 aaKnown RBP11.51□□□□□ -0.57
USP39-208ENST00000455732 TMEM243Q9BU79 118 aa11.51□□□□□ -0.57
USP39-208ENST00000455732 TRBV6-5A0A0K0K1A5 114 aa11.5□□□□□ -0.57
USP39-208ENST00000455732 RBX1P62877 108 aa11.5□□□□□ -0.57
USP39-208ENST00000455732 GAGE6Q13070 117 aa11.5□□□□□ -0.57
USP39-208ENST00000455732 COTL1Q14019 142 aa11.5□□□□□ -0.57
USP39-208ENST00000455732 NTN5Q8WTR8 489 aaPredicted RBP11.5□□□□□ -0.57
USP39-208ENST00000455732 CRPP02741 224 aa11.49□□□□□ -0.57
USP39-208ENST00000455732 ANGP03950 147 aaKnown RBP11.49□□□□□ -0.57
USP39-208ENST00000455732 IFITM2Q01629 132 aa11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms