RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 KCNIP4Q6PIL6 250 aa10.2□□□□□ -0.78
LIMS3-201ENST00000437679 Q8N3U1 123 aa10.2□□□□□ -0.78
LIMS3-201ENST00000437679 SMIM7Q9BQ49 75 aa10.2□□□□□ -0.78
LIMS3-201ENST00000437679 PGPEP1Q9NXJ5 209 aa10.2□□□□□ -0.78
LIMS3-201ENST00000437679 TRAV8-3A0A0A6YYJ7 113 aa10.19□□□□□ -0.78
LIMS3-201ENST00000437679 DAZ4Q86SG3 579 aaKnown RBP10.19□□□□□ -0.78
LIMS3-201ENST00000437679 NIT1Q86X76 327 aa10.19□□□□□ -0.78
LIMS3-201ENST00000437679 TM2D2Q9BX73 214 aa10.19□□□□□ -0.78
LIMS3-201ENST00000437679 DAZ3Q9NR90 486 aaKnown RBP10.19□□□□□ -0.78
LIMS3-201ENST00000437679 A0A087WX48 190 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 TRBV6-8A0A0A6YYG3 113 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 ZNF727A8MUV8 499 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 SRP19P09132 144 aaKnown RBP10.18□□□□□ -0.78
LIMS3-201ENST00000437679 TWIST1Q15672 202 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 TMEM97Q5BJF2 176 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 SUMO4Q6EEV6 95 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 TEX261Q6UWH6 196 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 FAM231DQ6ZW35 169 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 DNAJC30Q96LL9 226 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 CHCHD7Q9BUK0 85 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 DPH3P1Q9H4G8 78 aa10.18□□□□□ -0.78
LIMS3-201ENST00000437679 A8MWL6 223 aa10.17□□□□□ -0.78
LIMS3-201ENST00000437679 TMEM262E9PQX1 116 aa10.17□□□□□ -0.78
LIMS3-201ENST00000437679 M0QY20 66 aa10.17□□□□□ -0.78
LIMS3-201ENST00000437679 ELOBQ15370 118 aa10.17□□□□□ -0.78
LIMS3-201ENST00000437679 CDPF1Q6NVV7 123 aa10.17□□□□□ -0.78
LIMS3-201ENST00000437679 CNFNQ9BYD5 112 aa10.17□□□□□ -0.78
LIMS3-201ENST00000437679 DNAH5Q8TE73 4624 aa10.17□□□□□ -0.78
LIMS3-201ENST00000437679 LINC01551Q86U37 167 aa10.16□□□□□ -0.78
LIMS3-201ENST00000437679 GTSF1Q8WW33 167 aa10.16□□□□□ -0.78
LIMS3-201ENST00000437679 CDK2AP2O75956 126 aa10.15□□□□□ -0.78
LIMS3-201ENST00000437679 PKIAP61925 76 aa10.15□□□□□ -0.78
LIMS3-201ENST00000437679 CT83Q5H943 113 aa10.15□□□□□ -0.78
LIMS3-201ENST00000437679 RASL11AQ6T310 242 aa10.15□□□□□ -0.78
LIMS3-201ENST00000437679 SMIM15Q7Z3B0 74 aa10.15□□□□□ -0.78
LIMS3-201ENST00000437679 RMI2Q96E14 147 aa10.15□□□□□ -0.78
LIMS3-201ENST00000437679 CHCHD5Q9BSY4 110 aa10.15□□□□□ -0.78
LIMS3-201ENST00000437679 KLK12Q9UKR0 248 aa10.15□□□□□ -0.78
LIMS3-201ENST00000437679 LRCOL1A6NCL2 159 aa10.14□□□□□ -0.79
LIMS3-201ENST00000437679 FUSP35637 526 aaKnown RBP eCLIP10.14□□□□□ -0.79
LIMS3-201ENST00000437679 PEA15Q15121 130 aa10.14□□□□□ -0.79
LIMS3-201ENST00000437679 FAM74A3Q4VXF1 159 aa10.14□□□□□ -0.79
LIMS3-201ENST00000437679 BORCS7Q96B45 105 aa10.14□□□□□ -0.79
LIMS3-201ENST00000437679 PGLYRP4Q96LB8 373 aa10.14□□□□□ -0.79
LIMS3-201ENST00000437679 COX11Q9Y6N1 276 aa10.14□□□□□ -0.79
LIMS3-201ENST00000437679 TRBV25-1A0A075B6N4 114 aa10.13□□□□□ -0.79
LIMS3-201ENST00000437679 UBE2WQ96B02 151 aa10.13□□□□□ -0.79
LIMS3-201ENST00000437679 NIT2Q9NQR4 276 aa10.13□□□□□ -0.79
LIMS3-201ENST00000437679 OSTCQ9NRP0 149 aa10.13□□□□□ -0.79
LIMS3-201ENST00000437679 TMEM241Q24JQ0 296 aa10.12□□□□□ -0.79
LIMS3-201ENST00000437679 NTM-AS1Q6ZSK4 140 aa10.12□□□□□ -0.79
LIMS3-201ENST00000437679 C15orf54Q8N8G6 183 aa10.12□□□□□ -0.79
LIMS3-201ENST00000437679 TSKUQ8WUA8 353 aa10.12□□□□□ -0.79
LIMS3-201ENST00000437679 SMDT1Q9H4I9 107 aa10.12□□□□□ -0.79
LIMS3-201ENST00000437679 IGKV2D-24A0A075B6R9 120 aa10.11□□□□□ -0.79
LIMS3-201ENST00000437679 IGHV1-24A0A0C4DH33 117 aa10.11□□□□□ -0.79
LIMS3-201ENST00000437679 FOXA3P55318 350 aaPredicted RBP10.11□□□□□ -0.79
LIMS3-201ENST00000437679 Q0VG73 95 aa10.11□□□□□ -0.79
LIMS3-201ENST00000437679 MPV17L2Q567V2 206 aa10.11□□□□□ -0.79
LIMS3-201ENST00000437679 NTN5Q8WTR8 489 aaPredicted RBP10.11□□□□□ -0.79
LIMS3-201ENST00000437679 GFRA4Q9GZZ7 299 aa10.11□□□□□ -0.79
LIMS3-201ENST00000437679 RYR1P21817 5038 aa10.11□□□□□ -0.79
LIMS3-201ENST00000437679 HSPG2P98160 4391 aa10.1□□□□□ -0.79
LIMS3-201ENST00000437679 CRPP02741 224 aa10.1□□□□□ -0.79
LIMS3-201ENST00000437679 IQCJQ1A5X6 159 aa10.1□□□□□ -0.79
LIMS3-201ENST00000437679 Q8N814 137 aa10.1□□□□□ -0.79
LIMS3-201ENST00000437679 FRZBQ92765 325 aa10.1□□□□□ -0.79
LIMS3-201ENST00000437679 APOBP04114 4563 aaKnown RBP10.1□□□□□ -0.79
LIMS3-201ENST00000437679 IGLV5-52A0A0A0MRZ9 124 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 FAM231BA6NCW3 169 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 HIGD1CA8MV81 97 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 C9JQL5 133 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 ANGP03950 147 aaKnown RBP10.09□□□□□ -0.79
LIMS3-201ENST00000437679 GAGE6Q13070 117 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 ADIRFQ15847 76 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 ATRAIDQ6UW56 229 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 GATD1Q8NB37 220 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 ISOC2Q96AB3 205 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 NAT8Q9UHE5 227 aa10.09□□□□□ -0.79
LIMS3-201ENST00000437679 TRAV26-2A0A0B4J265 109 aa10.08□□□□□ -0.8
LIMS3-201ENST00000437679 A0A1B0GUT8 65 aa10.08□□□□□ -0.8
LIMS3-201ENST00000437679 GCSHP23434 173 aa10.08□□□□□ -0.8
LIMS3-201ENST00000437679 RPL23P62829 140 aaKnown RBP10.08□□□□□ -0.8
LIMS3-201ENST00000437679 SRSF3P84103 164 aaKnown RBP10.08□□□□□ -0.8
LIMS3-201ENST00000437679 Q8N976 141 aa10.08□□□□□ -0.8
LIMS3-201ENST00000437679 TMEM243Q9BU79 118 aa10.08□□□□□ -0.8
LIMS3-201ENST00000437679 LECT2O14960 151 aa10.07□□□□□ -0.8
LIMS3-201ENST00000437679 RBX1P62877 108 aa10.07□□□□□ -0.8
LIMS3-201ENST00000437679 COTL1Q14019 142 aa10.07□□□□□ -0.8
LIMS3-201ENST00000437679 MAPKAPK5-AS1Q8N8E1 139 aa10.07□□□□□ -0.8
LIMS3-201ENST00000437679 BAALCQ8WXS3 180 aa10.07□□□□□ -0.8
LIMS3-201ENST00000437679 C1orf43Q9BWL3 253 aa10.07□□□□□ -0.8
LIMS3-201ENST00000437679 V9GYV3 84 aa10.07□□□□□ -0.8
LIMS3-201ENST00000437679 KRTAP10-1P60331 282 aa10.06□□□□□ -0.8
LIMS3-201ENST00000437679 WFDC2Q14508 124 aa10.06□□□□□ -0.8
LIMS3-201ENST00000437679 ENHOQ6UWT2 76 aa10.06□□□□□ -0.8
LIMS3-201ENST00000437679 UBE2L6O14933 153 aa10.05□□□□□ -0.8
LIMS3-201ENST00000437679 AMTP48728 403 aa10.05□□□□□ -0.8
LIMS3-201ENST00000437679 RAB14P61106 215 aa10.05□□□□□ -0.8
LIMS3-201ENST00000437679 RIGQ13278 110 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 82.5 ms