RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 RNASE7Q9H1E1 156 aaKnown RBP12.65□□□□□ -0.38
SF3A1-202ENST00000411423 F5H697 171 aa12.64□□□□□ -0.39
SF3A1-202ENST00000411423 TAGLN2P37802 199 aaKnown RBP12.64□□□□□ -0.39
SF3A1-202ENST00000411423 BLOC1S1P78537 153 aa12.64□□□□□ -0.39
SF3A1-202ENST00000411423 NTM-AS1Q6ZSK4 140 aa12.64□□□□□ -0.39
SF3A1-202ENST00000411423 Q8N814 137 aa12.64□□□□□ -0.39
SF3A1-202ENST00000411423 TRBV6-8A0A0A6YYG3 113 aa12.63□□□□□ -0.39
SF3A1-202ENST00000411423 Q8N1X5 172 aa12.63□□□□□ -0.39
SF3A1-202ENST00000411423 KLK12Q9UKR0 248 aa12.63□□□□□ -0.39
SF3A1-202ENST00000411423 MGPP08493 103 aa12.62□□□□□ -0.39
SF3A1-202ENST00000411423 SUMO4Q6EEV6 95 aa12.62□□□□□ -0.39
SF3A1-202ENST00000411423 M0QY20 66 aa12.61□□□□□ -0.39
SF3A1-202ENST00000411423 LECT2O14960 151 aa12.61□□□□□ -0.39
SF3A1-202ENST00000411423 CACNG7P62955 275 aa12.61□□□□□ -0.39
SF3A1-202ENST00000411423 TRAV8-3A0A0A6YYJ7 113 aa12.6□□□□□ -0.39
SF3A1-202ENST00000411423 SMIM17P0DL12 118 aa12.6□□□□□ -0.39
SF3A1-202ENST00000411423 NTF3P20783 257 aa12.6□□□□□ -0.39
SF3A1-202ENST00000411423 GCSHP23434 173 aa12.6□□□□□ -0.39
SF3A1-202ENST00000411423 CTRLP40313 264 aa12.6□□□□□ -0.39
SF3A1-202ENST00000411423 TOR2AQ5JU69 321 aa12.6□□□□□ -0.39
SF3A1-202ENST00000411423 RPP21Q9H633 154 aaKnown RBP12.6□□□□□ -0.39
SF3A1-202ENST00000411423 BIN3Q9NQY0 253 aa12.6□□□□□ -0.39
SF3A1-202ENST00000411423 IGLV5-52A0A0A0MRZ9 124 aa12.59□□□□□ -0.39
SF3A1-202ENST00000411423 F2Z2F3 143 aa12.59□□□□□ -0.39
SF3A1-202ENST00000411423 TMEM250H0YL14 139 aa12.59□□□□□ -0.39
SF3A1-202ENST00000411423 HAMPP81172 84 aa12.59□□□□□ -0.39
SF3A1-202ENST00000411423 MPV17L2Q567V2 206 aa12.59□□□□□ -0.39
SF3A1-202ENST00000411423 GTSF1Q8WW33 167 aa12.59□□□□□ -0.39
SF3A1-202ENST00000411423 TM2D2Q9BX73 214 aa12.59□□□□□ -0.39
SF3A1-202ENST00000411423 URGCP-MRPS24S4R325 110 aa12.59□□□□□ -0.39
SF3A1-202ENST00000411423 A0A087WX48 190 aa12.58□□□□□ -0.4
SF3A1-202ENST00000411423 XKRY2A2RUG3 117 aa12.58□□□□□ -0.4
SF3A1-202ENST00000411423 BAALCQ8WXS3 180 aa12.58□□□□□ -0.4
SF3A1-202ENST00000411423 UBE2WQ96B02 151 aa12.58□□□□□ -0.4
SF3A1-202ENST00000411423 CHCHD7Q9BUK0 85 aa12.58□□□□□ -0.4
SF3A1-202ENST00000411423 TMEM262E9PQX1 116 aa12.57□□□□□ -0.4
SF3A1-202ENST00000411423 ENHOQ6UWT2 76 aa12.57□□□□□ -0.4
SF3A1-202ENST00000411423 NTN5Q8WTR8 489 aaPredicted RBP12.57□□□□□ -0.4
SF3A1-202ENST00000411423 CNFNQ9BYD5 112 aa12.57□□□□□ -0.4
SF3A1-202ENST00000411423 CEBPGP53567 150 aa12.56□□□□□ -0.4
SF3A1-202ENST00000411423 ATRAIDQ6UW56 229 aa12.56□□□□□ -0.4
SF3A1-202ENST00000411423 Q8N976 141 aa12.56□□□□□ -0.4
SF3A1-202ENST00000411423 IGKV2D-24A0A075B6R9 120 aa12.55□□□□□ -0.4
SF3A1-202ENST00000411423 FOXA3P55318 350 aaPredicted RBP12.55□□□□□ -0.4
SF3A1-202ENST00000411423 WDR73Q6P4I2 378 aa12.55□□□□□ -0.4
SF3A1-202ENST00000411423 C15orf54Q8N8G6 183 aa12.55□□□□□ -0.4
SF3A1-202ENST00000411423 DEFB104AQ8WTQ1 72 aa12.55□□□□□ -0.4
SF3A1-202ENST00000411423 FAM210AQ96ND0 272 aa12.55□□□□□ -0.4
SF3A1-202ENST00000411423 CHCHD5Q9BSY4 110 aa12.55□□□□□ -0.4
SF3A1-202ENST00000411423 DPH3P1Q9H4G8 78 aa12.55□□□□□ -0.4
SF3A1-202ENST00000411423 FAM30AQ9NZY2 134 aa12.55□□□□□ -0.4
SF3A1-202ENST00000411423 VPS13BQ7Z7G8 4022 aa12.54□□□□□ -0.4
SF3A1-202ENST00000411423 SRP19P09132 144 aaKnown RBP12.54□□□□□ -0.4
SF3A1-202ENST00000411423 TRGC1P0CF51 173 aa12.54□□□□□ -0.4
SF3A1-202ENST00000411423 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.53□□□□□ -0.4
SF3A1-202ENST00000411423 GATCO43716 136 aaKnown RBP12.53□□□□□ -0.4
SF3A1-202ENST00000411423 GAGE6Q13070 117 aa12.53□□□□□ -0.4
SF3A1-202ENST00000411423 TWIST1Q15672 202 aa12.53□□□□□ -0.4
SF3A1-202ENST00000411423 RASL11AQ6T310 242 aa12.53□□□□□ -0.4
SF3A1-202ENST00000411423 FAM231DQ6ZW35 169 aa12.53□□□□□ -0.4
SF3A1-202ENST00000411423 EIF5A2Q9GZV4 153 aaKnown RBP12.53□□□□□ -0.4
SF3A1-202ENST00000411423 TRAV26-2A0A0B4J265 109 aa12.52□□□□□ -0.41
SF3A1-202ENST00000411423 RBX1P62877 108 aa12.52□□□□□ -0.41
SF3A1-202ENST00000411423 ELOBQ15370 118 aa12.52□□□□□ -0.41
SF3A1-202ENST00000411423 IQCJQ1A5X6 159 aa12.52□□□□□ -0.41
SF3A1-202ENST00000411423 LINC01551Q86U37 167 aa12.52□□□□□ -0.41
SF3A1-202ENST00000411423 GATD1Q8NB37 220 aa12.52□□□□□ -0.41
SF3A1-202ENST00000411423 C9JQL5 133 aa12.51□□□□□ -0.41
SF3A1-202ENST00000411423 H7C1H1 209 aa12.51□□□□□ -0.41
SF3A1-202ENST00000411423 ANGP03950 147 aaKnown RBP12.51□□□□□ -0.41
SF3A1-202ENST00000411423 KCNIP4Q6PIL6 250 aa12.51□□□□□ -0.41
SF3A1-202ENST00000411423 SMIM7Q9BQ49 75 aa12.51□□□□□ -0.41
SF3A1-202ENST00000411423 COX11Q9Y6N1 276 aa12.51□□□□□ -0.41
SF3A1-202ENST00000411423 TRBV25-1A0A075B6N4 114 aa12.5□□□□□ -0.41
SF3A1-202ENST00000411423 NDUFS6O75380 124 aaKnown RBP12.5□□□□□ -0.41
SF3A1-202ENST00000411423 LINC01620Q4KN68 170 aa12.5□□□□□ -0.41
SF3A1-202ENST00000411423 TMEM97Q5BJF2 176 aa12.5□□□□□ -0.41
SF3A1-202ENST00000411423 CLPSL2Q6UWE3 100 aa12.5□□□□□ -0.41
SF3A1-202ENST00000411423 RMI2Q96E14 147 aa12.5□□□□□ -0.41
SF3A1-202ENST00000411423 PGLYRP4Q96LB8 373 aa12.5□□□□□ -0.41
SF3A1-202ENST00000411423 NIT2Q9NQR4 276 aa12.5□□□□□ -0.41
SF3A1-202ENST00000411423 IGHV1-24A0A0C4DH33 117 aa12.49□□□□□ -0.41
SF3A1-202ENST00000411423 SMR3BP02814 79 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-202ENST00000411423 Q0VG73 95 aa12.49□□□□□ -0.41
SF3A1-202ENST00000411423 KRTAP26-1Q6PEX3 210 aa12.49□□□□□ -0.41
SF3A1-202ENST00000411423 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.49□□□□□ -0.41
SF3A1-202ENST00000411423 PRR34Q9NV39 138 aa12.49□□□□□ -0.41
SF3A1-202ENST00000411423 SRSF3P84103 164 aaKnown RBP12.48□□□□□ -0.41
SF3A1-202ENST00000411423 RPL39LQ96EH5 51 aaKnown RBP12.48□□□□□ -0.41
SF3A1-202ENST00000411423 TMEM70Q9BUB7 260 aa12.48□□□□□ -0.41
SF3A1-202ENST00000411423 ZNF727A8MUV8 499 aa12.47□□□□□ -0.41
SF3A1-202ENST00000411423 GAS8-AS1O95177 125 aa12.47□□□□□ -0.41
SF3A1-202ENST00000411423 LINC00269Q8N2A0 174 aa12.47□□□□□ -0.41
SF3A1-202ENST00000411423 C20orf203Q8NBC4 194 aa12.47□□□□□ -0.41
SF3A1-202ENST00000411423 C1orf43Q9BWL3 253 aa12.47□□□□□ -0.41
SF3A1-202ENST00000411423 GFRA4Q9GZZ7 299 aa12.47□□□□□ -0.41
SF3A1-202ENST00000411423 IGLV4-60A0A075B6I1 120 aa12.46□□□□□ -0.41
SF3A1-202ENST00000411423 A8MWL6 223 aa12.46□□□□□ -0.41
SF3A1-202ENST00000411423 EPM2AB3EWF7 344 aa12.46□□□□□ -0.41
SF3A1-202ENST00000411423 CRPP02741 224 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms