RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 LINC00269Q8N2A0 174 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 PYGO2Q9BRQ0 406 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 CARHSP1Q9Y2V2 147 aaKnown RBP3.63□□□□□ -1.83
SCN1A-202ENST00000375405 NRXN3Q9Y4C0 1643 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 PSME4Q14997 1843 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 LRP5O75197 1615 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 RNF185Q96GF1 192 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 RNASE3P12724 160 aaKnown RBP3.63□□□□□ -1.83
SCN1A-202ENST00000375405 LINC00322Q6ZN03 302 aaPredicted RBP3.63□□□□□ -1.83
SCN1A-202ENST00000375405 IGKV1D-43A0A0B4J1Z2 117 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 CCL25O15444 150 aa3.63□□□□□ -1.83
SCN1A-202ENST00000375405 LCTP09848 1927 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 PIK3CD-AS1Q5SR53 167 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 SPAG11AQ6PDA7 123 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 FOXI2Q6ZQN5 318 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 J3QRE1 110 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 BEAN1Q3B7T3 259 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 LINC01554Q52M75 96 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 SBSPONQ8IVN8 264 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 HIST3H2BBQ8N257 126 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 KLHDC3Q9BQ90 382 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 IGLV1-36A0A0B4J1U3 117 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 NDUFV3P56181 108 aaKnown RBP3.62□□□□□ -1.83
SCN1A-202ENST00000375405 KIAA0087Q14695 138 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 PRR30Q53SZ7 412 aaPredicted RBP3.62□□□□□ -1.83
SCN1A-202ENST00000375405 C1orf195Q5TG92 126 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 C20orf144Q9BQM9 153 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 TRBV6-7A0A0A0MS04 114 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 PCOTHQ58A44 107 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 LYPD3O95274 346 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 C11orf53Q8IXP5 236 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 TRBV7-3A0A075B6L6 115 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 ZNF497Q6ZNH5 498 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 ADAMTS7Q9UKP4 1686 aa3.62□□□□□ -1.83
SCN1A-202ENST00000375405 IGHV2-5P01817 119 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 WT1P19544 449 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-202ENST00000375405 MYO18BQ8IUG5 2567 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 QSER1Q2KHR3 1735 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 HGFACQ04756 655 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 PDE6HQ13956 83 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 ENHOQ6UWT2 76 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 MIR7-3HGQ8N6C7 128 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 ZNF73O43830 326 aaPredicted RBP3.61□□□□□ -1.83
SCN1A-202ENST00000375405 CCKP06307 115 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 FN1P02751 2386 aaKnown RBP3.61□□□□□ -1.83
SCN1A-202ENST00000375405 WIPF3A6NGB9 483 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 H0YJW9 148 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 FAM229AH3BQW9 127 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 UBE2V1Q13404 147 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 NRGNQ92686 78 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 CTSZQ9UBR2 303 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 APLNQ9ULZ1 77 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 P0DMU3 169 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 FAM231AP0DMU4 169 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 FAM231CP0DMU5 169 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 IGLC2P0DOY2 106 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 IGLC3P0DOY3 106 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 Q8N8P6 123 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 PSORS1C2Q9UIG4 136 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 NYNRINQ9P2P1 1898 aaKnown RBP3.61□□□□□ -1.83
SCN1A-202ENST00000375405 PLA2G2DQ9UNK4 145 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 SBF2Q86WG5 1849 aa3.61□□□□□ -1.83
SCN1A-202ENST00000375405 TRBV30A0A0K0K1B3 111 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 CFC1BP0CG36 223 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 CFC1P0CG37 223 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 CRYGAP11844 174 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 CSRP3P50461 194 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 CFAP126Q5VTH2 177 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 Q6ZUT4 128 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 INAFM1C9JVW0 142 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 LINC01556Q5JQF7 62 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 ZSWIM8A7E2V4 1837 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 RBBP6Q7Z6E9 1792 aaKnown RBP3.6□□□□□ -1.83
SCN1A-202ENST00000375405 C2orf70A6NJV1 201 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 ADORA2A-AS1P86434 159 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 MRPL51Q4U2R6 128 aaKnown RBP3.6□□□□□ -1.83
SCN1A-202ENST00000375405 TMEM105Q8N8V8 129 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 STRCQ7RTU9 1775 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 C9orf118A6NHY6 69 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 SIVA1O15304 175 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 C1orf137Q5JT78 98 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 ZNF837Q96EG3 531 aaPredicted RBP3.6□□□□□ -1.83
SCN1A-202ENST00000375405 ZNRD1Q9P1U0 126 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 V9GYV3 84 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 PINLYPA6NC86 204 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 E7EQL1 145 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 CSRP1P21291 193 aaKnown RBP3.6□□□□□ -1.83
SCN1A-202ENST00000375405 LYPD1Q8N2G4 141 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 F8VRH5 84 aa3.6□□□□□ -1.83
SCN1A-202ENST00000375405 RPL28P46779 137 aaKnown RBP3.59□□□□□ -1.83
SCN1A-202ENST00000375405 CRIP2P52943 208 aaPredicted RBP3.59□□□□□ -1.83
SCN1A-202ENST00000375405 LINC00205P59089 165 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 REG3AQ06141 175 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 MSMPQ1L6U9 139 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 TMEM75Q8N9X5 138 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 OBSL1O75147 1896 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 A4D1N5 150 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 PRSS33Q8NF86 280 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 C2orf48Q96LS8 159 aa3.59□□□□□ -1.83
SCN1A-202ENST00000375405 TRPM3Q9HCF6 1732 aaPredicted RBP3.59□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms