RNA–Protein interactions for RNA: ENST00000372216.8

COL4A6-202, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-202ENST00000372216 LINC01548A6NM66 108 aa7.47□□□□□ -1.21
COL4A6-202ENST00000372216 MP68P56378 58 aa7.47□□□□□ -1.21
COL4A6-202ENST00000372216 UBE2V1Q13404 147 aa7.47□□□□□ -1.21
COL4A6-202ENST00000372216 PCP2Q8IVA1 136 aa7.47□□□□□ -1.21
COL4A6-202ENST00000372216 IL17DQ8TAD2 202 aa7.47□□□□□ -1.21
COL4A6-202ENST00000372216 MSRB1Q9NZV6 116 aa7.47□□□□□ -1.21
COL4A6-202ENST00000372216 SPTBN1Q01082 2364 aaKnown RBP7.47□□□□□ -1.21
COL4A6-202ENST00000372216 ETDBQ3ZM63 59 aa7.46□□□□□ -1.21
COL4A6-202ENST00000372216 CEP192Q8TEP8 1941 aa7.46□□□□□ -1.21
COL4A6-202ENST00000372216 ROS1P08922 2347 aa7.46□□□□□ -1.21
COL4A6-202ENST00000372216 C9orf118A6NHY6 69 aa7.46□□□□□ -1.21
COL4A6-202ENST00000372216 TP53TG3Q9ULZ0 132 aa7.46□□□□□ -1.21
COL4A6-202ENST00000372216 UBE2D3P61077 147 aa7.46□□□□□ -1.22
COL4A6-202ENST00000372216 CADP27708 2225 aa7.46□□□□□ -1.22
COL4A6-202ENST00000372216 IGKV2D-26A0A0A0MRZ7 120 aa7.46□□□□□ -1.22
COL4A6-202ENST00000372216 OPRPNQ99935 248 aaPredicted RBP7.46□□□□□ -1.22
COL4A6-202ENST00000372216 A0A0J9YXV3 536 aa7.46□□□□□ -1.22
COL4A6-202ENST00000372216 COX8AP10176 69 aa7.46□□□□□ -1.22
COL4A6-202ENST00000372216 CCDC140Q96MF4 163 aa7.46□□□□□ -1.22
COL4A6-202ENST00000372216 TRBV7-3A0A075B6L6 115 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 CLEC2BQ92478 149 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 FAM167A-AS1Q96KT0 104 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 C11orf71Q6IPW1 123 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 WFDC10BQ8IUB3 73 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 SCXQ7RTU7 201 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 DCANP1Q8TF63 244 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 MDFICQ9P1T7 246 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 NUP210LQ5VU65 1888 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 PLA2G2AP14555 144 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 PPDPFLQ8WWR9 84 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 DIRC1Q969H9 104 aa7.45□□□□□ -1.22
COL4A6-202ENST00000372216 HERV-K104P63124 156 aa7.44□□□□□ -1.22
COL4A6-202ENST00000372216 TMEM263Q8WUH6 116 aaKnown RBP7.44□□□□□ -1.22
COL4A6-202ENST00000372216 MUC22E2RYF6 1773 aaPredicted RBP7.44□□□□□ -1.22
COL4A6-202ENST00000372216 IGF1P05019 195 aa7.44□□□□□ -1.22
COL4A6-202ENST00000372216 C12orf74Q32Q52 190 aa7.44□□□□□ -1.22
COL4A6-202ENST00000372216 C9orf85Q96MD7 179 aa7.44□□□□□ -1.22
COL4A6-202ENST00000372216 RETNLBQ9BQ08 111 aa7.44□□□□□ -1.22
COL4A6-202ENST00000372216 PLA2G2EQ9NZK7 142 aa7.44□□□□□ -1.22
COL4A6-202ENST00000372216 ZFHX2Q9C0A1 2572 aaPredicted RBP7.44□□□□□ -1.22
COL4A6-202ENST00000372216 EML6Q6ZMW3 1958 aa7.44□□□□□ -1.22
COL4A6-202ENST00000372216 MLST8Q9BVC4 326 aa7.44□□□□□ -1.22
COL4A6-202ENST00000372216 A0A0J9YX75 114 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 IGLV9-49A0A0B4J1Y8 123 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 FAM222AQ5U5X8 452 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 SMR3AQ99954 134 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 SS18L2Q9UHA2 77 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 C20orf144Q9BQM9 153 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 Q6ZVH6 145 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.43□□□□□ -1.22
COL4A6-202ENST00000372216 C7orf33Q8WU49 177 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 DOCK11Q5JSL3 2073 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 CFC1BP0CG36 223 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 CFC1P0CG37 223 aa7.43□□□□□ -1.22
COL4A6-202ENST00000372216 A0A1W2PPM0 123 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 PSMB8P28062 276 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 MIR7-3HGQ8N6C7 128 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 ZNF747Q9BV97 191 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 MED14OSP0DP75 135 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 SHISA2Q6UWI4 295 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 MPLKIPQ8TAP9 179 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 LINC00574Q9H8X3 128 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 MALRD1Q5VYJ5 2156 aa7.42□□□□□ -1.22
COL4A6-202ENST00000372216 Q6ZSV7 163 aa7.41□□□□□ -1.22
COL4A6-202ENST00000372216 SPTSSBQ8NFR3 76 aa7.41□□□□□ -1.22
COL4A6-202ENST00000372216 WNK2Q9Y3S1 2297 aa7.41□□□□□ -1.22
COL4A6-202ENST00000372216 PRSS47A8MTI9 375 aa7.41□□□□□ -1.22
COL4A6-202ENST00000372216 LGALS9O00182 355 aa7.41□□□□□ -1.22
COL4A6-202ENST00000372216 LINC00526Q96FQ7 95 aa7.41□□□□□ -1.22
COL4A6-202ENST00000372216 TNRC6AQ8NDV7 1962 aaKnown RBP7.41□□□□□ -1.22
COL4A6-202ENST00000372216 Q6ZTI0 123 aa7.4□□□□□ -1.22
COL4A6-202ENST00000372216 REG3AQ06141 175 aa7.4□□□□□ -1.22
COL4A6-202ENST00000372216 C1orf229Q6ZS94 237 aaPredicted RBP7.4□□□□□ -1.22
COL4A6-202ENST00000372216 K7EP34 96 aa7.4□□□□□ -1.22
COL4A6-202ENST00000372216 IGKV2-28A0A075B6P5 120 aa7.4□□□□□ -1.23
COL4A6-202ENST00000372216 FSTL3O95633 263 aa7.4□□□□□ -1.23
COL4A6-202ENST00000372216 IGKV2D-28P01615 120 aa7.4□□□□□ -1.23
COL4A6-202ENST00000372216 COX7BP24311 80 aa7.4□□□□□ -1.23
COL4A6-202ENST00000372216 A4D1N5 150 aa7.4□□□□□ -1.23
COL4A6-202ENST00000372216 C14orf177Q52M58 125 aa7.4□□□□□ -1.23
COL4A6-202ENST00000372216 DEFB114Q30KQ6 69 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 PRO0255Q9UI72 69 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 MUC6Q6W4X9 2439 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 TRBV10-2A0A0K0K1G8 114 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 F8W1H4 67 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 LINC00173Q6ZV60 143 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 MED13Q9UHV7 2174 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 TEX49A0A1B0GTD5 131 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 RPL37AP8A6NKH3 93 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 C10orf99Q6UWK7 81 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 NFE4Q86UQ8 179 aa7.39□□□□□ -1.23
COL4A6-202ENST00000372216 SLPIP03973 132 aa7.38□□□□□ -1.23
COL4A6-202ENST00000372216 LY6LH3BQJ8 138 aa7.38□□□□□ -1.23
COL4A6-202ENST00000372216 SIVA1O15304 175 aa7.38□□□□□ -1.23
COL4A6-202ENST00000372216 Q6ZUT4 128 aa7.38□□□□□ -1.23
COL4A6-202ENST00000372216 TOMM6Q96B49 74 aa7.38□□□□□ -1.23
COL4A6-202ENST00000372216 WFDC10AQ9H1F0 79 aa7.38□□□□□ -1.23
COL4A6-202ENST00000372216 X6R8D5 127 aa7.38□□□□□ -1.23
COL4A6-202ENST00000372216 PCNX1Q96RV3 2341 aa7.38□□□□□ -1.23
COL4A6-202ENST00000372216 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.37□□□□□ -1.232e-8■■■■■ 31.6
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms