RNA–Protein interactions for RNA: ENST00000344626.8

SMARCA4-201, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best) BASIC

Gene SMARCA4, Length 5,392 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-201ENST00000344626 PRO0255Q9UI72 69 aa12.42□□□□□ -0.42
SMARCA4-201ENST00000344626 TANC2Q9HCD6 1990 aa12.42□□□□□ -0.42
SMARCA4-201ENST00000344626 IGHV3-30P01768 117 aa12.42□□□□□ -0.42
SMARCA4-201ENST00000344626 IGHV3-33P01772 117 aa12.42□□□□□ -0.42
SMARCA4-201ENST00000344626 IGHV3-30-3P0DP02 117 aa12.42□□□□□ -0.42
SMARCA4-201ENST00000344626 IGHV3-30-5P0DP03 117 aa12.42□□□□□ -0.42
SMARCA4-201ENST00000344626 TRBV7-3A0A075B6L6 115 aa12.41□□□□□ -0.42
SMARCA4-201ENST00000344626 IGKV2D-29A0A075B6S2 120 aaPredicted RBP12.41□□□□□ -0.42
SMARCA4-201ENST00000344626 IGKV2-29A2NJV5 120 aaPredicted RBP12.41□□□□□ -0.42
SMARCA4-201ENST00000344626 ZFAND6Q6FIF0 208 aa12.41□□□□□ -0.42
SMARCA4-201ENST00000344626 SFTA2Q6UW10 78 aa12.41□□□□□ -0.42
SMARCA4-201ENST00000344626 Q6ZWC4 215 aa12.41□□□□□ -0.42
SMARCA4-201ENST00000344626 ZNF479Q96JC4 524 aa12.41□□□□□ -0.42
SMARCA4-201ENST00000344626 NDUFAF3Q9BU61 184 aa12.4□□□□□ -0.42
SMARCA4-201ENST00000344626 TRAV4A0A0B4J268 109 aa12.4□□□□□ -0.42
SMARCA4-201ENST00000344626 F8VRH5 84 aa12.4□□□□□ -0.42
SMARCA4-201ENST00000344626 ZNF292O60281 2723 aa12.4□□□□□ -0.42
SMARCA4-201ENST00000344626 LYRM9A8MSI8 78 aa12.4□□□□□ -0.42
SMARCA4-201ENST00000344626 NDUFA12Q9UI09 145 aa12.4□□□□□ -0.42
SMARCA4-201ENST00000344626 LGALS9BQ3B8N2 356 aa12.39□□□□□ -0.43
SMARCA4-201ENST00000344626 LGALS9CQ6DKI2 356 aa12.39□□□□□ -0.43
SMARCA4-201ENST00000344626 AMTNQ6UX39 209 aa12.39□□□□□ -0.43
SMARCA4-201ENST00000344626 IGLV1-40P01703 118 aa12.38□□□□□ -0.43
SMARCA4-201ENST00000344626 CDK2AP2O75956 126 aa12.37□□□□□ -0.43
SMARCA4-201ENST00000344626 LAMTOR3Q9UHA4 124 aa12.37□□□□□ -0.43
SMARCA4-201ENST00000344626 STPG4Q8N801 248 aa12.37□□□□□ -0.43
SMARCA4-201ENST00000344626 ZFAND3Q9H8U3 227 aa12.37□□□□□ -0.43
SMARCA4-201ENST00000344626 NXPH4O95158 308 aa12.37□□□□□ -0.43
SMARCA4-201ENST00000344626 DEFB131BA0A096LNP1 70 aa12.36□□□□□ -0.43
SMARCA4-201ENST00000344626 TRBV10-1A0A0K0K1A3 114 aa12.36□□□□□ -0.43
SMARCA4-201ENST00000344626 ADAMTS20P59510 1910 aa12.36□□□□□ -0.43
SMARCA4-201ENST00000344626 MIFP14174 115 aa12.36□□□□□ -0.43
SMARCA4-201ENST00000344626 RNASE13Q5GAN3 156 aaKnown RBP12.36□□□□□ -0.43
SMARCA4-201ENST00000344626 FAM222AQ5U5X8 452 aa12.36□□□□□ -0.43
SMARCA4-201ENST00000344626 RPL39LQ96EH5 51 aaKnown RBP12.36□□□□□ -0.43
SMARCA4-201ENST00000344626 MRPL35Q9NZE8 188 aaKnown RBP12.36□□□□□ -0.43
SMARCA4-201ENST00000344626 ZNF124Q15973 351 aa12.35□□□□□ -0.43
SMARCA4-201ENST00000344626 SPINK8P0C7L1 97 aa12.35□□□□□ -0.43
SMARCA4-201ENST00000344626 PTPRBP23467 1997 aa12.35□□□□□ -0.43
SMARCA4-201ENST00000344626 SAMD5Q5TGI4 173 aa12.35□□□□□ -0.43
SMARCA4-201ENST00000344626 WFDC10AQ9H1F0 79 aa12.35□□□□□ -0.43
SMARCA4-201ENST00000344626 IGLV10-54A0A075B6I4 117 aa12.34□□□□□ -0.43
SMARCA4-201ENST00000344626 COX7A2LO14548 114 aa12.34□□□□□ -0.43
SMARCA4-201ENST00000344626 CTRLP40313 264 aa12.34□□□□□ -0.43
SMARCA4-201ENST00000344626 SLC25A29Q8N8R3 303 aa12.34□□□□□ -0.43
SMARCA4-201ENST00000344626 MDFICQ9P1T7 246 aa12.34□□□□□ -0.43
SMARCA4-201ENST00000344626 UBE2BP63146 152 aa12.33□□□□□ -0.43
SMARCA4-201ENST00000344626 MSRB1Q9NZV6 116 aa12.33□□□□□ -0.43
SMARCA4-201ENST00000344626 ZFP2Q6ZN57 461 aa12.33□□□□□ -0.44
SMARCA4-201ENST00000344626 CAMK2N2Q96S95 79 aa12.33□□□□□ -0.44
SMARCA4-201ENST00000344626 GATA1P15976 413 aaPredicted RBP12.33□□□□□ -0.44
SMARCA4-201ENST00000344626 LOC105371267A0A1B0GV96 52 aa12.32□□□□□ -0.44
SMARCA4-201ENST00000344626 J3QQQ9 107 aa12.32□□□□□ -0.44
SMARCA4-201ENST00000344626 DSCAML1Q8TD84 2053 aa12.32□□□□□ -0.44
SMARCA4-201ENST00000344626 HERV-K104P63124 156 aa12.32□□□□□ -0.44
SMARCA4-201ENST00000344626 VSIG2Q96IQ7 327 aa12.31□□□□□ -0.44
SMARCA4-201ENST00000344626 ITPR3Q14573 2671 aa12.31□□□□□ -0.44
SMARCA4-201ENST00000344626 C5orf38Q86SI9 138 aa12.31□□□□□ -0.44
SMARCA4-201ENST00000344626 PLA2G2EQ9NZK7 142 aa12.31□□□□□ -0.44
SMARCA4-201ENST00000344626 TRAV26-1A0A087WT03 109 aa12.3□□□□□ -0.44
SMARCA4-201ENST00000344626 C10orf126Q8N4M7 172 aa12.3□□□□□ -0.44
SMARCA4-201ENST00000344626 EDA2RQ9HAV5 297 aa12.3□□□□□ -0.44
SMARCA4-201ENST00000344626 LY6G6CO95867 125 aa12.3□□□□□ -0.44
SMARCA4-201ENST00000344626 C16orf95Q9H693 158 aa12.3□□□□□ -0.44
SMARCA4-201ENST00000344626 FGF6P10767 208 aa12.3□□□□□ -0.44
SMARCA4-201ENST00000344626 BAHCC1Q9P281 2608 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 TTC32Q5I0X7 151 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 SNHG12Q9BXW3 62 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 FLNAP21333 2647 aaKnown RBP12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 KIR2DL5BA0A0G2JN68 375 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 KIR2DL5BA0A0G2JPC4 375 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 KIR2DL5AQ8N109 375 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 KIR2DL5BQ8NHK3 375 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 GTSF1Q8WW33 167 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 TMEM126AQ9H061 195 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 TRAV13-2A0A0B4J235 113 aa12.29□□□□□ -0.44
SMARCA4-201ENST00000344626 TRAV8-2A0A0B4J237 113 aa12.28□□□□□ -0.44
SMARCA4-201ENST00000344626 IGHV4-30-4P0DP06 118 aa12.28□□□□□ -0.44
SMARCA4-201ENST00000344626 RPL18AQ02543 176 aaKnown RBP12.28□□□□□ -0.44
SMARCA4-201ENST00000344626 C19orf71A6NCJ1 209 aa12.27□□□□□ -0.44
SMARCA4-201ENST00000344626 Q6ZTI0 123 aa12.27□□□□□ -0.44
SMARCA4-201ENST00000344626 C20orf173Q96LM9 149 aa12.27□□□□□ -0.44
SMARCA4-201ENST00000344626 KLK12Q9UKR0 248 aa12.27□□□□□ -0.44
SMARCA4-201ENST00000344626 C14orf177Q52M58 125 aa12.27□□□□□ -0.45
SMARCA4-201ENST00000344626 ZNF747Q9BV97 191 aa12.26□□□□□ -0.45
SMARCA4-201ENST00000344626 RAI1Q7Z5J4 1906 aaPredicted RBP12.26□□□□□ -0.45
SMARCA4-201ENST00000344626 COX11Q9Y6N1 276 aa12.26□□□□□ -0.45
SMARCA4-201ENST00000344626 C15orf53Q8NAA6 179 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 TRAV10A0A0B4J240 114 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 NDUFA1O15239 70 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 CRIP2P52943 208 aaPredicted RBP12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 MPV17L2Q567V2 206 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 ATG2AQ2TAZ0 1938 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 IGLV2-18A0A075B6J9 118 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 PYY3Q5JQD4 70 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 Q9H8V8 135 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 SCRT2Q9NQ03 307 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 ZNF580Q9UK33 172 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 A0A1B0GV90 55 aa12.25□□□□□ -0.45
SMARCA4-201ENST00000344626 TIRAPP58753 221 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms