RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 TRAV8-3A0A0A6YYJ7 113 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 TRBV6-4A0A1B0GX49 114 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 CTAG1AP78358 180 aa7.53□□□□□ -1.2
USP54-201ENST00000339859 ABCA1O95477 2261 aa7.52□□□□□ -1.2
USP54-201ENST00000339859 hDV102S1A0JD36 115 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 GTSF1Q8WW33 167 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 NDUFA12Q9UI09 145 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 DOPEY2Q9Y3R5 2298 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 PLCE1Q9P212 2302 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 F8VRH5 84 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 NDUFA1O15239 70 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 GATA1P15976 413 aaPredicted RBP7.52□□□□□ -1.21
USP54-201ENST00000339859 ZNF80P51504 273 aaPredicted RBP7.52□□□□□ -1.21
USP54-201ENST00000339859 LGALS9CQ6DKI2 356 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 ZNF625Q96I27 306 aaPredicted RBP7.52□□□□□ -1.21
USP54-201ENST00000339859 ZNF479Q96JC4 524 aa7.52□□□□□ -1.21
USP54-201ENST00000339859 LY6G6CO95867 125 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 NHP2Q9NX24 153 aaKnown RBP7.51□□□□□ -1.21
USP54-201ENST00000339859 CDK2AP2O75956 126 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 VPS25Q9BRG1 176 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 NXPH4O95158 308 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 CXCL5P42830 114 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 C5orf38Q86SI9 138 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 CFAP126Q5VTH2 177 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 ZFAND2AQ8N6M9 145 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 EDA2RQ9HAV5 297 aa7.51□□□□□ -1.21
USP54-201ENST00000339859 FSHBP01225 129 aa7.5□□□□□ -1.21
USP54-201ENST00000339859 ODF3L2Q3SX64 289 aa7.5□□□□□ -1.21
USP54-201ENST00000339859 SIVA1O15304 175 aa7.5□□□□□ -1.21
USP54-201ENST00000339859 NANOS2P60321 138 aaKnown RBP7.5□□□□□ -1.21
USP54-201ENST00000339859 SRCAPQ6ZRS2 3230 aa7.5□□□□□ -1.21
USP54-201ENST00000339859 CCL25O15444 150 aa7.49□□□□□ -1.21
USP54-201ENST00000339859 KLLNB2CW77 178 aa7.49□□□□□ -1.21
USP54-201ENST00000339859 KPRPQ5T749 579 aaPredicted RBP7.49□□□□□ -1.21
USP54-201ENST00000339859 COX7B2Q8TF08 81 aa7.49□□□□□ -1.21
USP54-201ENST00000339859 G3V4G9 280 aa7.49□□□□□ -1.21
USP54-201ENST00000339859 ARFGEF3Q5TH69 2177 aa7.49□□□□□ -1.21
USP54-201ENST00000339859 TOMM6Q96B49 74 aa7.49□□□□□ -1.21
USP54-201ENST00000339859 MRPL35Q9NZE8 188 aaKnown RBP7.49□□□□□ -1.21
USP54-201ENST00000339859 ATXN8Q156A1 80 aa7.48□□□□□ -1.21
USP54-201ENST00000339859 GAGE12HA6NDE8 117 aa7.48□□□□□ -1.21
USP54-201ENST00000339859 UTRNP46939 3433 aa7.48□□□□□ -1.21
USP54-201ENST00000339859 CITED1Q99966 193 aa7.48□□□□□ -1.21
USP54-201ENST00000339859 IGLC6P0CF74 106 aa7.48□□□□□ -1.21
USP54-201ENST00000339859 LINC00518Q8N0U6 118 aa7.48□□□□□ -1.21
USP54-201ENST00000339859 EDN2P20800 178 aa7.47□□□□□ -1.21
USP54-201ENST00000339859 REG3AQ06141 175 aa7.47□□□□□ -1.21
USP54-201ENST00000339859 J3QQQ9 107 aa7.47□□□□□ -1.21
USP54-201ENST00000339859 TIMM17AQ99595 171 aa7.47□□□□□ -1.21
USP54-201ENST00000339859 RETNQ9HD89 108 aa7.47□□□□□ -1.21
USP54-201ENST00000339859 NEXN-AS1Q8NBZ9 246 aa7.47□□□□□ -1.21
USP54-201ENST00000339859 TRAV13-2A0A0B4J235 113 aa7.47□□□□□ -1.21
USP54-201ENST00000339859 PRSS47A8MTI9 375 aa7.47□□□□□ -1.21
USP54-201ENST00000339859 GAGE2BQ13066 116 aa7.46□□□□□ -1.21
USP54-201ENST00000339859 LAMTOR3Q9UHA4 124 aa7.46□□□□□ -1.21
USP54-201ENST00000339859 SPAG11BQ08648 103 aa7.46□□□□□ -1.21
USP54-201ENST00000339859 STPG4Q8N801 248 aa7.46□□□□□ -1.22
USP54-201ENST00000339859 GAGE2EQ4V326 116 aa7.46□□□□□ -1.22
USP54-201ENST00000339859 GAGE2DQ9UEU5 116 aa7.46□□□□□ -1.22
USP54-201ENST00000339859 PIK3CD-AS1Q5SR53 167 aa7.46□□□□□ -1.22
USP54-201ENST00000339859 MLST8Q9BVC4 326 aa7.46□□□□□ -1.22
USP54-201ENST00000339859 Q9H8V8 135 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 PRR14LQ5THK1 2151 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 LELP1Q5T871 98 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 LINC00269Q8N2A0 174 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 IGLV2-8P01709 118 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 C20orf203Q8NBC4 194 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 TMEM126AQ9H061 195 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 TANC2Q9HCD6 1990 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 COL27A1Q8IZC6 1860 aaPredicted RBP7.45□□□□□ -1.22
USP54-201ENST00000339859 TRBV6-8A0A0A6YYG3 113 aa7.45□□□□□ -1.22
USP54-201ENST00000339859 SCGB1A1P11684 91 aa7.44□□□□□ -1.22
USP54-201ENST00000339859 BOD1L2Q8IYS8 172 aa7.44□□□□□ -1.22
USP54-201ENST00000339859 TRAV12-1A0A0B4J245 112 aa7.44□□□□□ -1.22
USP54-201ENST00000339859 SPCS1Q9Y6A9 102 aa7.44□□□□□ -1.22
USP54-201ENST00000339859 TDRG1Q3Y452 100 aa7.44□□□□□ -1.22
USP54-201ENST00000339859 SNHG12Q9BXW3 62 aa7.44□□□□□ -1.22
USP54-201ENST00000339859 RPL39P62891 51 aaKnown RBP7.44□□□□□ -1.22
USP54-201ENST00000339859 C9orf85Q96MD7 179 aa7.44□□□□□ -1.22
USP54-201ENST00000339859 SCRT2Q9NQ03 307 aa7.44□□□□□ -1.22
USP54-201ENST00000339859 MED13LQ71F56 2210 aa7.43□□□□□ -1.22
USP54-201ENST00000339859 KIR3DS1Q14943 382 aa7.43□□□□□ -1.22
USP54-201ENST00000339859 IGLV2-11P01706 119 aa7.43□□□□□ -1.22
USP54-201ENST00000339859 IGLV2-18A0A075B6J9 118 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 H3BUT2 72 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 MRPS12O15235 138 aaKnown RBP7.42□□□□□ -1.22
USP54-201ENST00000339859 MRGPRG-AS1Q2M3A8 158 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 HCFC1P51610 2035 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 PTPN13Q12923 2485 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 ETDCA0A1B0GVM5 59 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 BAALCQ8WXS3 180 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 LINC00467Q9BRT7 94 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 A0A096LNT2 108 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 LINC00322Q6ZN03 302 aaPredicted RBP7.42□□□□□ -1.22
USP54-201ENST00000339859 TET2Q6N021 2002 aaPredicted RBP7.42□□□□□ -1.22
USP54-201ENST00000339859 M0R2N4 97 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 FHL3Q13643 280 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 MIAQ16674 131 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 BEAN1Q3B7T3 259 aa7.42□□□□□ -1.22
USP54-201ENST00000339859 DKK2Q9UBU2 259 aa7.42□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms