RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TP53TG1Q9Y2A0 90 aa5.18□□□□□ -1.58
SF3B1-201ENST00000335508 HSD52Q0P140 79 aa5.18□□□□□ -1.58
SF3B1-201ENST00000335508 FSHBP01225 129 aa5.18□□□□□ -1.58
SF3B1-201ENST00000335508 PROK1P58294 105 aa5.18□□□□□ -1.58
SF3B1-201ENST00000335508 BRK1Q8WUW1 75 aa5.18□□□□□ -1.58
SF3B1-201ENST00000335508 MALP21145 153 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 KLK9Q2XQG4 91 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 MRPL16Q9NX20 251 aaKnown RBP5.17□□□□□ -1.58
SF3B1-201ENST00000335508 TRAV16A0A0A6YYK6 109 aaPredicted RBP5.17□□□□□ -1.58
SF3B1-201ENST00000335508 ZNF815PA8K554 130 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 DNAL4O96015 105 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 ZNF747Q9BV97 191 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 TENM4Q6N022 2769 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 A0A1B0GXF2 115 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 KLLNB2CW77 178 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 TIMM17AQ99595 171 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 CHAC1Q9BUX1 264 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 C16orf95Q9H693 158 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 GNRH2O43555 120 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 IGLV2-8P01709 118 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 ADAMTSL5Q6ZMM2 481 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 APRG1Q8IVJ8 170 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 PRUNE2Q8WUY3 3088 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 A0A0U1RRA0 63 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 ESDP10768 282 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 COX8CQ7Z4L0 72 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 PRIMA1Q86XR5 153 aa5.17□□□□□ -1.58
SF3B1-201ENST00000335508 LYRM9A8MSI8 78 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 IGLV1-51P01701 117 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 Q8N2B8 174 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 TRAV13-1A0A0B4J241 112 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 MIFP14174 115 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 DAZ2Q13117 558 aaKnown RBP5.16□□□□□ -1.58
SF3B1-201ENST00000335508 DAZ4Q86SG3 579 aaKnown RBP5.16□□□□□ -1.58
SF3B1-201ENST00000335508 ZNF479Q96JC4 524 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 DAZ3Q9NR90 486 aaKnown RBP5.16□□□□□ -1.58
SF3B1-201ENST00000335508 ATP6V0E2Q8NHE4 81 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 IGHV1-24A0A0C4DH33 117 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 SMKR1H3BMG3 65 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 ZFP2Q6ZN57 461 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 TIMM21Q9BVV7 248 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 LOC107984156A0A0G2JMH3 177 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 VPREB1P12018 145 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 SPATA12Q7Z6I5 190 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 ARL17AQ8IVW1 177 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 CNFNQ9BYD5 112 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 NOP10Q9NPE3 64 aaKnown RBP5.16□□□□□ -1.58
SF3B1-201ENST00000335508 MSRB1Q9NZV6 116 aa5.16□□□□□ -1.58
SF3B1-201ENST00000335508 RPL32P62910 135 aaKnown RBP5.15□□□□□ -1.58
SF3B1-201ENST00000335508 IGHV3-73A0A0B4J1V6 119 aa5.15□□□□□ -1.58
SF3B1-201ENST00000335508 GTSF1Q8WW33 167 aa5.15□□□□□ -1.58
SF3B1-201ENST00000335508 HERVK_113P63121 156 aa5.15□□□□□ -1.58
SF3B1-201ENST00000335508 ANKRD29Q8N6D5 301 aa5.15□□□□□ -1.58
SF3B1-201ENST00000335508 TRBV7-3A0A075B6L6 115 aa5.15□□□□□ -1.59
SF3B1-201ENST00000335508 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP5.15□□□□□ -1.59
SF3B1-201ENST00000335508 C20orf203Q8NBC4 194 aa5.15□□□□□ -1.59
SF3B1-201ENST00000335508 ATG2AQ2TAZ0 1938 aa5.15□□□□□ -1.59
SF3B1-201ENST00000335508 CCL18P55774 89 aa5.15□□□□□ -1.59
SF3B1-201ENST00000335508 DEFB135Q30KP9 77 aa5.15□□□□□ -1.59
SF3B1-201ENST00000335508 PHLDA1Q8WV24 401 aaPredicted RBP5.14□□□□□ -1.59
SF3B1-201ENST00000335508 CPAMD8Q8IZJ3 1885 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 ODF3L2Q3SX64 289 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 C10orf99Q6UWK7 81 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 DCANP1Q8TF63 244 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 TNRC6BQ9UPQ9 1833 aaKnown RBP5.14□□□□□ -1.59
SF3B1-201ENST00000335508 IGHV4-4A0A075B6R2 117 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 IGKV3D-20A0A0C4DH25 116 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 Q6ZWC4 215 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 MKI67P46013 3256 aaKnown RBP5.14□□□□□ -1.59
SF3B1-201ENST00000335508 KMT2BQ9UMN6 2715 aaPredicted RBP5.14□□□□□ -1.59
SF3B1-201ENST00000335508 H7C2G1 150 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 CFHR3Q02985 330 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 OCIAD2Q56VL3 154 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 RBMY1CP0DJD4 496 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 MRPL35Q9NZE8 188 aaKnown RBP5.14□□□□□ -1.59
SF3B1-201ENST00000335508 PTPRBP23467 1997 aa5.14□□□□□ -1.59
SF3B1-201ENST00000335508 F8W735 103 aaPredicted RBP5.14□□□□□ -1.59
SF3B1-201ENST00000335508 MRPS12O15235 138 aaKnown RBP5.14□□□□□ -1.59
SF3B1-201ENST00000335508 ZNF80P51504 273 aaPredicted RBP5.13□□□□□ -1.59
SF3B1-201ENST00000335508 ORAOV1Q8WV07 137 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 SPATA25Q9BR10 227 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 Q6ZS46 218 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 BAALCQ8WXS3 180 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 ICOSQ9Y6W8 199 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 FRYLO94915 3013 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 TRBV6-5A0A0K0K1A5 114 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 RBMY1BA6NDE4 496 aaKnown RBP5.13□□□□□ -1.59
SF3B1-201ENST00000335508 RBMY1EA6NEQ0 496 aaKnown RBP5.13□□□□□ -1.59
SF3B1-201ENST00000335508 PSCAO43653 123 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 SPINK8P0C7L1 97 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 RBMY1DP0C7P1 496 aaKnown RBP5.13□□□□□ -1.59
SF3B1-201ENST00000335508 RBMY1A1P0DJD3 496 aaKnown RBP5.13□□□□□ -1.59
SF3B1-201ENST00000335508 C1orf195Q5TG92 126 aa5.13□□□□□ -1.59
SF3B1-201ENST00000335508 KMT2EQ8IZD2 1858 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 TRBV6-4A0A1B0GX49 114 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 CCL25O15444 150 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 TACC2O95359 2948 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 IGHV3-16A0A0C4DH30 117 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 PRSS29PA6NIE9 313 aa5.12□□□□□ -1.59
SF3B1-201ENST00000335508 IGLC3P0DOY3 106 aa5.12□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 59.3 ms