RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 CUBNO60494 3623 aa12.35□□□□□ -0.43
CTCF-201ENST00000264010 NAV2Q8IVL1 2488 aa12.35□□□□□ -0.43
CTCF-201ENST00000264010 SUMO2P61956 95 aaKnown RBP12.35□□□□□ -0.43
CTCF-201ENST00000264010 KLK9Q2XQG4 91 aa12.35□□□□□ -0.43
CTCF-201ENST00000264010 TRPT1Q86TN4 253 aaKnown RBP12.35□□□□□ -0.43
CTCF-201ENST00000264010 Q96MF0 132 aa12.35□□□□□ -0.43
CTCF-201ENST00000264010 KLK9Q9UKQ9 250 aa12.35□□□□□ -0.43
CTCF-201ENST00000264010 SMIM2Q9BVW6 85 aa12.35□□□□□ -0.43
CTCF-201ENST00000264010 DOPEY1Q5JWR5 2465 aa12.35□□□□□ -0.43
CTCF-201ENST00000264010 LGALS1P09382 135 aaKnown RBP12.34□□□□□ -0.43
CTCF-201ENST00000264010 MRAPQ8TCY5 172 aa12.34□□□□□ -0.43
CTCF-201ENST00000264010 GNRH2O43555 120 aa12.34□□□□□ -0.43
CTCF-201ENST00000264010 AVPP01185 164 aa12.34□□□□□ -0.43
CTCF-201ENST00000264010 DEFB113Q30KQ7 82 aa12.34□□□□□ -0.43
CTCF-201ENST00000264010 Q6ZS46 218 aa12.34□□□□□ -0.43
CTCF-201ENST00000264010 USP9YO00507 2555 aaPredicted RBP12.34□□□□□ -0.43
CTCF-201ENST00000264010 CNFNQ9BYD5 112 aa12.33□□□□□ -0.43
CTCF-201ENST00000264010 SETD2Q9BYW2 2564 aaPredicted RBP12.33□□□□□ -0.44
CTCF-201ENST00000264010 BRI3O95415 125 aa12.33□□□□□ -0.44
CTCF-201ENST00000264010 RNF185Q96GF1 192 aa12.33□□□□□ -0.44
CTCF-201ENST00000264010 TRAV4A0A0B4J268 109 aa12.33□□□□□ -0.44
CTCF-201ENST00000264010 IGLV1-40P01703 118 aa12.33□□□□□ -0.44
CTCF-201ENST00000264010 C11orf21Q9P2W6 132 aa12.33□□□□□ -0.44
CTCF-201ENST00000264010 TRACP01848 142 aa12.32□□□□□ -0.44
CTCF-201ENST00000264010 CIRBPQ14011 172 aaKnown RBP12.32□□□□□ -0.44
CTCF-201ENST00000264010 TRGV11A0A075B6L2 103 aa12.32□□□□□ -0.44
CTCF-201ENST00000264010 S100A7L2Q5SY68 101 aa12.32□□□□□ -0.44
CTCF-201ENST00000264010 UFSP1Q6NVU6 142 aa12.32□□□□□ -0.44
CTCF-201ENST00000264010 SPXQ9BT56 116 aa12.31□□□□□ -0.44
CTCF-201ENST00000264010 ZFAND2AQ8N6M9 145 aa12.31□□□□□ -0.44
CTCF-201ENST00000264010 MED14OSP0DP75 135 aa12.31□□□□□ -0.44
CTCF-201ENST00000264010 CARD19Q96LW7 228 aa12.31□□□□□ -0.44
CTCF-201ENST00000264010 HOXD3P31249 432 aaPredicted RBP12.31□□□□□ -0.44
CTCF-201ENST00000264010 TOMM7Q9P0U1 55 aa12.3□□□□□ -0.44
CTCF-201ENST00000264010 SPINK13Q1W4C9 94 aa12.3□□□□□ -0.44
CTCF-201ENST00000264010 A0A087WWL8 130 aa12.3□□□□□ -0.44
CTCF-201ENST00000264010 VCYO14598 125 aa12.3□□□□□ -0.44
CTCF-201ENST00000264010 J3KT08 172 aa12.29□□□□□ -0.44
CTCF-201ENST00000264010 UBE2E2Q96LR5 201 aa12.29□□□□□ -0.44
CTCF-201ENST00000264010 A0A0U1RQV1 116 aa12.29□□□□□ -0.44
CTCF-201ENST00000264010 C5orf47Q569G3 176 aa12.29□□□□□ -0.44
CTCF-201ENST00000264010 C2orf66Q6UXQ4 117 aa12.29□□□□□ -0.44
CTCF-201ENST00000264010 TRAV12-2A0A075B6T6 113 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 IGHV1OR15-1A0A075B7D0 117 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 E9PLD3 99 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 C19orf54Q5BKX5 351 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 PPDPFQ9H3Y8 114 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 F8VRH5 84 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 LINC01619G3V211 115 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 PSMB8P28062 276 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 DEFB131AP59861 70 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 PRR9Q5T870 116 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 TMEM126AQ9H061 195 aa12.28□□□□□ -0.44
CTCF-201ENST00000264010 TEX49A0A1B0GTD5 131 aa12.27□□□□□ -0.44
CTCF-201ENST00000264010 SPATA25Q9BR10 227 aa12.27□□□□□ -0.44
CTCF-201ENST00000264010 IGHV4OR15-8A0A075B7B6 117 aa12.27□□□□□ -0.45
CTCF-201ENST00000264010 A0A087WW49 117 aa12.27□□□□□ -0.45
CTCF-201ENST00000264010 IGHV4-31P0DP07 118 aa12.27□□□□□ -0.45
CTCF-201ENST00000264010 PAPPA-AS1Q5QFB9 102 aa12.27□□□□□ -0.45
CTCF-201ENST00000264010 TCL1BO95988 128 aa12.26□□□□□ -0.45
CTCF-201ENST00000264010 ZFYVE26Q68DK2 2539 aa12.26□□□□□ -0.45
CTCF-201ENST00000264010 Q6YL49 198 aa12.26□□□□□ -0.45
CTCF-201ENST00000264010 ZNF843Q8N446 348 aa12.26□□□□□ -0.45
CTCF-201ENST00000264010 IGHV4-4A0A075B6R2 117 aa12.25□□□□□ -0.45
CTCF-201ENST00000264010 LINC01587Q99440 93 aa12.25□□□□□ -0.45
CTCF-201ENST00000264010 USP9XQ93008 2570 aaPredicted RBP12.25□□□□□ -0.45
CTCF-201ENST00000264010 C10orf99Q6UWK7 81 aa12.25□□□□□ -0.45
CTCF-201ENST00000264010 RPL39LQ96EH5 51 aaKnown RBP12.25□□□□□ -0.45
CTCF-201ENST00000264010 LRRK2Q5S007 2527 aa12.25□□□□□ -0.45
CTCF-201ENST00000264010 CELSR1Q9NYQ6 3014 aa12.25□□□□□ -0.45
CTCF-201ENST00000264010 TRAV16A0A0A6YYK6 109 aaPredicted RBP12.25□□□□□ -0.45
CTCF-201ENST00000264010 A0A1W2PRX2 142 aa12.25□□□□□ -0.45
CTCF-201ENST00000264010 A0A087WX48 190 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 IGKV3D-7A0A0C4DH55 119 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 ZNF876PQ49A33 203 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 MAPKAPK5-AS1Q8N8E1 139 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 ZNF580Q9UK33 172 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 LOC107984640A0A0U1RRK4 108 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 A4D1N5 150 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 CFC1BP0CG36 223 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 CFC1P0CG37 223 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 LRRC75A-AS1Q8N1F1 130 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 Q6ZQT7 251 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 TNFRSF18Q9Y5U5 241 aa12.24□□□□□ -0.45
CTCF-201ENST00000264010 TRAV12-1A0A0B4J245 112 aa12.23□□□□□ -0.45
CTCF-201ENST00000264010 GAS8-AS1O95177 125 aa12.23□□□□□ -0.45
CTCF-201ENST00000264010 ODF1Q14990 250 aa12.23□□□□□ -0.45
CTCF-201ENST00000264010 C11orf44Q8N8P7 122 aa12.23□□□□□ -0.45
CTCF-201ENST00000264010 A0A0J9YX75 114 aa12.23□□□□□ -0.45
CTCF-201ENST00000264010 SPANXA1Q9NS26 97 aa12.23□□□□□ -0.45
CTCF-201ENST00000264010 TAL2Q16559 108 aa12.23□□□□□ -0.45
CTCF-201ENST00000264010 DEFB136Q30KP8 78 aa12.23□□□□□ -0.45
CTCF-201ENST00000264010 IGHV3OR16-12A0A075B7B8 117 aa12.22□□□□□ -0.45
CTCF-201ENST00000264010 SOCS3O14543 225 aa12.22□□□□□ -0.45
CTCF-201ENST00000264010 KNCNA6PVL3 124 aa12.22□□□□□ -0.45
CTCF-201ENST00000264010 LINC00694P0DN24 101 aa12.22□□□□□ -0.45
CTCF-201ENST00000264010 SLURP1P55000 103 aa12.22□□□□□ -0.45
CTCF-201ENST00000264010 Q8N1Y9 231 aa12.22□□□□□ -0.45
CTCF-201ENST00000264010 TP53TG1Q9Y2A0 90 aa12.22□□□□□ -0.45
CTCF-201ENST00000264010 PSMG3-AS1Q96PY0 264 aa12.22□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 58 ms