RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 IGHV3-64A0A075B6Q5 118 aa10.13□□□□□ -0.79
LDLR-201ENST00000252444 COX7B2Q8TF08 81 aa10.13□□□□□ -0.79
LDLR-201ENST00000252444 NXPH4O95158 308 aa10.13□□□□□ -0.79
LDLR-201ENST00000252444 PRB4P10163 310 aaPredicted RBP10.13□□□□□ -0.79
LDLR-201ENST00000252444 TRAV8-4A0A0B4J246 113 aa10.12□□□□□ -0.79
LDLR-201ENST00000252444 FAM222AQ5U5X8 452 aa10.12□□□□□ -0.79
LDLR-201ENST00000252444 CFAP126Q5VTH2 177 aa10.12□□□□□ -0.79
LDLR-201ENST00000252444 AMTNQ6UX39 209 aa10.12□□□□□ -0.79
LDLR-201ENST00000252444 IGLC3P0DOY3 106 aa10.12□□□□□ -0.79
LDLR-201ENST00000252444 H3BUT2 72 aa10.12□□□□□ -0.79
LDLR-201ENST00000252444 SOCS3O14543 225 aa10.12□□□□□ -0.79
LDLR-201ENST00000252444 SPTBN1Q01082 2364 aaKnown RBP10.12□□□□□ -0.79
LDLR-201ENST00000252444 IGKV2D-29A0A075B6S2 120 aaPredicted RBP10.11□□□□□ -0.79
LDLR-201ENST00000252444 IGKV2-29A2NJV5 120 aaPredicted RBP10.11□□□□□ -0.79
LDLR-201ENST00000252444 WNK2Q9Y3S1 2297 aa10.11□□□□□ -0.79
LDLR-201ENST00000252444 A0A1B0GWB2 263 aa10.11□□□□□ -0.79
LDLR-201ENST00000252444 UBE2WQ96B02 151 aa10.11□□□□□ -0.79
LDLR-201ENST00000252444 CITED1Q99966 193 aa10.11□□□□□ -0.79
LDLR-201ENST00000252444 DOCK11Q5JSL3 2073 aa10.11□□□□□ -0.79
LDLR-201ENST00000252444 F8WDY8 70 aa10.11□□□□□ -0.79
LDLR-201ENST00000252444 BVES-AS1Q5T3Y7 98 aa10.11□□□□□ -0.79
LDLR-201ENST00000252444 E9PLD3 99 aa10.1□□□□□ -0.79
LDLR-201ENST00000252444 INAFM2P0DMQ5 153 aa10.1□□□□□ -0.79
LDLR-201ENST00000252444 VSIG2Q96IQ7 327 aa10.1□□□□□ -0.79
LDLR-201ENST00000252444 MRPS36P82909 103 aaKnown RBP10.1□□□□□ -0.79
LDLR-201ENST00000252444 BAALCQ8WXS3 180 aa10.1□□□□□ -0.79
LDLR-201ENST00000252444 MSRB1Q9NZV6 116 aa10.1□□□□□ -0.79
LDLR-201ENST00000252444 TRBV27A0A0K0K1C4 114 aa10.09□□□□□ -0.79
LDLR-201ENST00000252444 DEFB131BA0A096LNP1 70 aa10.09□□□□□ -0.79
LDLR-201ENST00000252444 CEND1Q8N111 149 aa10.09□□□□□ -0.79
LDLR-201ENST00000252444 NUPR2A6NF83 97 aa10.09□□□□□ -0.79
LDLR-201ENST00000252444 TIRAPP58753 221 aa10.09□□□□□ -0.79
LDLR-201ENST00000252444 C10orf99Q6UWK7 81 aa10.09□□□□□ -0.79
LDLR-201ENST00000252444 CAMK2N2Q96S95 79 aa10.09□□□□□ -0.79
LDLR-201ENST00000252444 IGHV1-58A0A0C4DH39 117 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 A0A0J9YXY3 114 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 FHL3Q13643 280 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 TRAV26-1A0A087WT03 109 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 KIR3DS1Q14943 382 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 Q6ZS46 218 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 Q6ZTI0 123 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 M0QY20 66 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 LELP1Q5T871 98 aa10.08□□□□□ -0.8
LDLR-201ENST00000252444 HIVEP2P31629 2446 aa10.07□□□□□ -0.8
LDLR-201ENST00000252444 IGHV4-28A0A0C4DH34 117 aa10.07□□□□□ -0.8
LDLR-201ENST00000252444 H0YGX0 51 aa10.07□□□□□ -0.8
LDLR-201ENST00000252444 SPINK8P0C7L1 97 aa10.07□□□□□ -0.8
LDLR-201ENST00000252444 NEXN-AS1Q8NBZ9 246 aa10.07□□□□□ -0.8
LDLR-201ENST00000252444 C11orf68Q9H3H3 251 aaKnown RBP10.07□□□□□ -0.8
LDLR-201ENST00000252444 ARFGEF3Q5TH69 2177 aa10.07□□□□□ -0.8
LDLR-201ENST00000252444 PRO1854Q9UHT4 67 aa10.07□□□□□ -0.8
LDLR-201ENST00000252444 CUL9Q8IWT3 2517 aa10.06□□□□□ -0.8
LDLR-201ENST00000252444 XCL1P47992 114 aa10.06□□□□□ -0.8
LDLR-201ENST00000252444 ODF3L2Q3SX64 289 aa10.06□□□□□ -0.8
LDLR-201ENST00000252444 TSPAN13O95857 204 aa10.06□□□□□ -0.8
LDLR-201ENST00000252444 Q6ZQT7 251 aa10.06□□□□□ -0.8
LDLR-201ENST00000252444 EDA2RQ9HAV5 297 aa10.06□□□□□ -0.8
LDLR-201ENST00000252444 AKAP6Q13023 2319 aa10.06□□□□□ -0.8
LDLR-201ENST00000252444 MIAQ16674 131 aa10.06□□□□□ -0.8
LDLR-201ENST00000252444 TRBV6-8A0A0A6YYG3 113 aa10.05□□□□□ -0.8
LDLR-201ENST00000252444 CRIP1P50238 77 aa10.05□□□□□ -0.8
LDLR-201ENST00000252444 SCRT2Q9NQ03 307 aa10.05□□□□□ -0.8
LDLR-201ENST00000252444 PGPEP1Q9NXJ5 209 aa10.05□□□□□ -0.8
LDLR-201ENST00000252444 P0DMU3 169 aa10.04□□□□□ -0.8
LDLR-201ENST00000252444 FAM231AP0DMU4 169 aa10.04□□□□□ -0.8
LDLR-201ENST00000252444 FAM231CP0DMU5 169 aa10.04□□□□□ -0.8
LDLR-201ENST00000252444 GATA1P15976 413 aaPredicted RBP10.04□□□□□ -0.8
LDLR-201ENST00000252444 BEAN1Q3B7T3 259 aa10.04□□□□□ -0.8
LDLR-201ENST00000252444 LINC00322Q6ZN03 302 aaPredicted RBP10.04□□□□□ -0.8
LDLR-201ENST00000252444 RNASE3P12724 160 aaKnown RBP10.04□□□□□ -0.8
LDLR-201ENST00000252444 Q9H8V8 135 aa10.04□□□□□ -0.8
LDLR-201ENST00000252444 UFSP1Q6NVU6 142 aa10.04□□□□□ -0.8
LDLR-201ENST00000252444 RNF183Q96D59 192 aa10.04□□□□□ -0.8
LDLR-201ENST00000252444 DKK2Q9UBU2 259 aa10.04□□□□□ -0.8
LDLR-201ENST00000252444 C9orf118A6NHY6 69 aa10.03□□□□□ -0.8
LDLR-201ENST00000252444 MPV17L2Q567V2 206 aa10.03□□□□□ -0.8
LDLR-201ENST00000252444 FAM208BQ5VWN6 2430 aa10.03□□□□□ -0.8
LDLR-201ENST00000252444 IGHV4-30-4P0DP06 118 aa10.03□□□□□ -0.8
LDLR-201ENST00000252444 RNF185Q96GF1 192 aa10.02□□□□□ -0.8
LDLR-201ENST00000252444 A0A096LPF7 62 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 K7EP13 123 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 ODF1Q14990 250 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 YPEL4Q96NS1 127 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 TP53TG3Q9ULZ0 132 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 IGLL5B9A064 214 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 SPAG11BQ08648 103 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 HCFC1P51610 2035 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 SCGB1A1P11684 91 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 C18orf65Q6ZTR6 163 aa10.02□□□□□ -0.81
LDLR-201ENST00000252444 ACACBO00763 2458 aa10.01□□□□□ -0.81
LDLR-201ENST00000252444 GDF5OSQ5U4N7 250 aa10.01□□□□□ -0.81
LDLR-201ENST00000252444 IGHV3-30P01768 117 aa10.01□□□□□ -0.81
LDLR-201ENST00000252444 IGHV3-33P01772 117 aa10.01□□□□□ -0.81
LDLR-201ENST00000252444 IGHV3-30-3P0DP02 117 aa10.01□□□□□ -0.81
LDLR-201ENST00000252444 IGHV3-30-5P0DP03 117 aa10.01□□□□□ -0.81
LDLR-201ENST00000252444 C2orf82Q6UX34 121 aa10.01□□□□□ -0.81
LDLR-201ENST00000252444 TIMM17BO60830 172 aa10.01□□□□□ -0.81
LDLR-201ENST00000252444 A0A0J9YXV3 536 aa10□□□□□ -0.81
LDLR-201ENST00000252444 PFN2P35080 140 aa10□□□□□ -0.81
LDLR-201ENST00000252444 REG3AQ06141 175 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 179.1 ms