RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 H7C1H1 209 aa11.61□□□□□ -0.55
UPF1-204ENST00000596842 ZNF256Q9Y2P7 627 aaPredicted RBP11.61□□□□□ -0.55
UPF1-204ENST00000596842 TMEM262E9PQX1 116 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 HERVK_113P61574 105 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 COX8CQ7Z4L0 72 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 RPL13AP40429 203 aaKnown RBP11.6□□□□□ -0.55
UPF1-204ENST00000596842 RRN3P1Q2M238 152 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 TRBV7-1A0A0A6YYK4 115 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 F8VRH5 84 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 KLRB1Q12918 225 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 EBI3Q14213 229 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 ZNF56Q15929 161 aa11.6□□□□□ -0.55
UPF1-204ENST00000596842 SLC25A16P16260 332 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 EDN2P20800 178 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 WNK1Q9H4A3 2382 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 IGHV3-64A0A075B6Q5 118 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 ZNF688P0C7X2 276 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 TMEM190Q8WZ59 177 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 PRADC1Q9BSG0 188 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 ZMAT4Q9H898 229 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 TRAV21A0A0B4J279 112 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 RBAKDNA6NC62 111 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 PLNP26678 52 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 RASL10AQ92737 203 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 PPDPFQ9H3Y8 114 aa11.59□□□□□ -0.55
UPF1-204ENST00000596842 TMEM170BQ5T4T1 132 aa11.58□□□□□ -0.56
UPF1-204ENST00000596842 C5orf56Q8N8D9 126 aa11.58□□□□□ -0.56
UPF1-204ENST00000596842 RS1O15537 224 aa11.58□□□□□ -0.56
UPF1-204ENST00000596842 DUSP14O95147 198 aaKnown RBP11.58□□□□□ -0.56
UPF1-204ENST00000596842 BLCAPP62952 87 aa11.58□□□□□ -0.56
UPF1-204ENST00000596842 CELSR2Q9HCU4 2923 aa11.58□□□□□ -0.56
UPF1-204ENST00000596842 DPH3P1Q9H4G8 78 aa11.58□□□□□ -0.56
UPF1-204ENST00000596842 TRAV12-3A0A0B4J271 114 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 RPL39P62891 51 aaKnown RBP11.57□□□□□ -0.56
UPF1-204ENST00000596842 C9orf47Q6ZRZ4 202 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 C15orf53Q8NAA6 179 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 HIGD1BQ9P298 99 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 FBXL19-AS1Q494R0 122 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 TRAV8-4A0A0B4J246 113 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 MYMXA0A1B0GTQ4 84 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 H3BUX3 64 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 CD7P09564 240 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 ORMDL2Q53FV1 153 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 C9orf153Q5TBE3 101 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 C9orf139Q6ZV77 190 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 NTN5Q8WTR8 489 aaPredicted RBP11.57□□□□□ -0.56
UPF1-204ENST00000596842 ZFYVE26Q68DK2 2539 aa11.57□□□□□ -0.56
UPF1-204ENST00000596842 Q6ZS46 218 aa11.56□□□□□ -0.56
UPF1-204ENST00000596842 NDUFV3P56181 108 aaKnown RBP11.56□□□□□ -0.56
UPF1-204ENST00000596842 RHPN1-AS1Q9BWJ2 59 aa11.56□□□□□ -0.56
UPF1-204ENST00000596842 TRAV12-2A0A075B6T6 113 aa11.56□□□□□ -0.56
UPF1-204ENST00000596842 TRAV4A0A0B4J268 109 aa11.56□□□□□ -0.56
UPF1-204ENST00000596842 PLEKHB2Q96CS7 222 aa11.56□□□□□ -0.56
UPF1-204ENST00000596842 MOB4Q9Y3A3 225 aa11.56□□□□□ -0.56
UPF1-204ENST00000596842 SONP18583 2426 aaKnown RBP11.55□□□□□ -0.56
UPF1-204ENST00000596842 LMO4P61968 165 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 ZFAND2AQ8N6M9 145 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 TP53TG1Q9Y2A0 90 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 BAALCQ8WXS3 180 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 CHCHD5Q9BSY4 110 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 TM2D2Q9BX73 214 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 ABCA2Q9BZC7 2435 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 IGHV4-38-2P0DP08 117 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 SRSF2Q01130 221 aaKnown RBP11.55□□□□□ -0.56
UPF1-204ENST00000596842 PHLDA1Q8WV24 401 aaPredicted RBP11.55□□□□□ -0.56
UPF1-204ENST00000596842 AJUBAQ96IF1 538 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 EDA2RQ9HAV5 297 aa11.55□□□□□ -0.56
UPF1-204ENST00000596842 TRAV2A0A0B4J234 112 aa11.54□□□□□ -0.56
UPF1-204ENST00000596842 E9PLD3 99 aa11.54□□□□□ -0.56
UPF1-204ENST00000596842 ANKRD29Q8N6D5 301 aa11.54□□□□□ -0.56
UPF1-204ENST00000596842 LINC00477Q96M19 166 aa11.54□□□□□ -0.56
UPF1-204ENST00000596842 ZANQ9Y493 2812 aa11.54□□□□□ -0.56
UPF1-204ENST00000596842 FLNCQ14315 2725 aa11.54□□□□□ -0.56
UPF1-204ENST00000596842 LGALS1P09382 135 aaKnown RBP11.53□□□□□ -0.56
UPF1-204ENST00000596842 NBL1P41271 181 aa11.53□□□□□ -0.56
UPF1-204ENST00000596842 UTP20O75691 2785 aaKnown RBP11.53□□□□□ -0.56
UPF1-204ENST00000596842 MUC4Q99102 2169 aa11.53□□□□□ -0.56
UPF1-204ENST00000596842 NFE4Q86UQ8 179 aa11.53□□□□□ -0.56
UPF1-204ENST00000596842 DUX5Q96PT3 197 aa11.53□□□□□ -0.56
UPF1-204ENST00000596842 NPC2P61916 151 aa11.52□□□□□ -0.56
UPF1-204ENST00000596842 OPRPNQ99935 248 aaPredicted RBP11.52□□□□□ -0.56
UPF1-204ENST00000596842 C19orf84I3L1E1 186 aa11.52□□□□□ -0.57
UPF1-204ENST00000596842 CSMD2Q7Z408 3487 aa11.52□□□□□ -0.57
UPF1-204ENST00000596842 GPHB5Q86YW7 130 aa11.52□□□□□ -0.57
UPF1-204ENST00000596842 TEN1Q86WV5 123 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 TOMM6Q96B49 74 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 PSMG3-AS1Q96PY0 264 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 KLK9Q9UKQ9 250 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 IGHV3-73A0A0B4J1V6 119 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 LOC107984640A0A0U1RRK4 108 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 C11orf86A6NJI1 115 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 SLC25A20O43772 301 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 NEXN-AS1Q8NBZ9 246 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 CDIP1Q9H305 208 aa11.51□□□□□ -0.57
UPF1-204ENST00000596842 OVOL1O14753 267 aa11.5□□□□□ -0.57
UPF1-204ENST00000596842 IGHV4-61A0A0C4DH41 118 aa11.5□□□□□ -0.57
UPF1-204ENST00000596842 PSMG4Q5JS54 123 aa11.5□□□□□ -0.57
UPF1-204ENST00000596842 ABCA12Q86UK0 2595 aa11.5□□□□□ -0.57
UPF1-204ENST00000596842 RNASE3P12724 160 aaKnown RBP11.49□□□□□ -0.57
UPF1-204ENST00000596842 TRPT1Q86TN4 253 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms