RNA–Protein interactions for RNA: ENST00000593582.5

TRIM28-203, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 533 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-203ENST00000593582 SULT1A2P50226 295 aa10.32□□□□□ -0.76
TRIM28-203ENST00000593582 PRR27Q6MZM9 219 aa10.32□□□□□ -0.76
TRIM28-203ENST00000593582 C14orf178Q8N769 122 aaPredicted RBP10.32□□□□□ -0.76
TRIM28-203ENST00000593582 SFRP2Q96HF1 295 aa10.32□□□□□ -0.76
TRIM28-203ENST00000593582 A0A087WWL8 130 aa10.31□□□□□ -0.76
TRIM28-203ENST00000593582 RPL19P84098 196 aaKnown RBP10.31□□□□□ -0.76
TRIM28-203ENST00000593582 Q6ZNX1 250 aa10.31□□□□□ -0.76
TRIM28-203ENST00000593582 SLC51BQ86UW2 128 aa10.31□□□□□ -0.76
TRIM28-203ENST00000593582 CXCL1P09341 107 aa10.3□□□□□ -0.76
TRIM28-203ENST00000593582 LINC00694P0DN24 101 aa10.3□□□□□ -0.76
TRIM28-203ENST00000593582 C11orf52Q96A22 123 aa10.3□□□□□ -0.76
TRIM28-203ENST00000593582 PGPEP1Q9NXJ5 209 aa10.3□□□□□ -0.76
TRIM28-203ENST00000593582 RYR1P21817 5038 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 A0A087WTM6 91 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 A0A087WWC5 75 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 IBA57-AS1B1ANH7 110 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 IFNA1P01562 189 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 IGHV3-30P01768 117 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 IGHV3-33P01772 117 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 IGHV3-30-3P0DP02 117 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 IGHV3-30-5P0DP03 117 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 AKAP14Q86UN6 197 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 DERL1Q9BUN8 251 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 Q9UF83 564 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 HSPG2P98160 4391 aa10.29□□□□□ -0.76
TRIM28-203ENST00000593582 PSCAO43653 123 aa10.28□□□□□ -0.76
TRIM28-203ENST00000593582 PDE6DO43924 150 aa10.28□□□□□ -0.76
TRIM28-203ENST00000593582 MEF2BQ02080 365 aaPredicted RBP10.28□□□□□ -0.76
TRIM28-203ENST00000593582 CDPF1Q6NVV7 123 aa10.28□□□□□ -0.76
TRIM28-203ENST00000593582 DNAH5Q8TE73 4624 aa10.27□□□□□ -0.76
TRIM28-203ENST00000593582 TRBV10-1A0A0K0K1A3 114 aa10.27□□□□□ -0.77
TRIM28-203ENST00000593582 OR5AL1P0C617 328 aa10.27□□□□□ -0.77
TRIM28-203ENST00000593582 CENPWQ5EE01 88 aa10.27□□□□□ -0.77
TRIM28-203ENST00000593582 OR10AG1Q8NH19 301 aa10.27□□□□□ -0.77
TRIM28-203ENST00000593582 SSBP4Q9BWG4 385 aaPredicted RBP10.27□□□□□ -0.77
TRIM28-203ENST00000593582 KRTAP17-1Q9BYP8 105 aa10.27□□□□□ -0.77
TRIM28-203ENST00000593582 Q9HAA7 133 aa10.27□□□□□ -0.77
TRIM28-203ENST00000593582 hCG_2014768A0A024R1R8 64 aa10.26□□□□□ -0.77
TRIM28-203ENST00000593582 SNAI2O43623 268 aa10.26□□□□□ -0.77
TRIM28-203ENST00000593582 GNG4P50150 75 aa10.26□□□□□ -0.77
TRIM28-203ENST00000593582 LAGE3Q14657 143 aa10.26□□□□□ -0.77
TRIM28-203ENST00000593582 SPANXN1Q5VSR9 72 aa10.26□□□□□ -0.77
TRIM28-203ENST00000593582 DAZAP1Q96EP5 407 aaKnown RBP10.26□□□□□ -0.77
TRIM28-203ENST00000593582 PCLOQ9Y6V0 5065 aa10.26□□□□□ -0.77
TRIM28-203ENST00000593582 BCL2P10415 239 aa10.25□□□□□ -0.77
TRIM28-203ENST00000593582 RAB4BP61018 213 aa10.25□□□□□ -0.77
TRIM28-203ENST00000593582 RPL36AP83881 106 aaKnown RBP10.25□□□□□ -0.77
TRIM28-203ENST00000593582 ZNF56Q15929 161 aa10.25□□□□□ -0.77
TRIM28-203ENST00000593582 RPL36ALQ969Q0 106 aaKnown RBP10.25□□□□□ -0.77
TRIM28-203ENST00000593582 SMIM12Q96EX1 92 aa10.25□□□□□ -0.77
TRIM28-203ENST00000593582 TRBV7-3A0A075B6L6 115 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 MUC21A0A0G2JKD1 596 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 MUC21A0A140T8X8 626 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 FUSP35637 526 aaKnown RBP eCLIP10.24□□□□□ -0.773e-7■■□□□ 14.5
TRIM28-203ENST00000593582 TAGLN2P37802 199 aaKnown RBP10.24□□□□□ -0.77
TRIM28-203ENST00000593582 SSTP61278 116 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 C9orf62Q8N4C0 152 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 MAPKAPK5-AS1Q8N8E1 139 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 MED9Q9NWA0 146 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 VAX2Q9UIW0 290 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 URGCP-MRPS24S4R325 110 aa10.24□□□□□ -0.77
TRIM28-203ENST00000593582 APOBP04114 4563 aaKnown RBP10.23□□□□□ -0.77
TRIM28-203ENST00000593582 RAB19A4D1S5 217 aa10.23□□□□□ -0.77
TRIM28-203ENST00000593582 IGLV2-8P01709 118 aa10.23□□□□□ -0.77
TRIM28-203ENST00000593582 SMIM17P0DL12 118 aa10.23□□□□□ -0.77
TRIM28-203ENST00000593582 RPS20P60866 119 aaKnown RBP10.23□□□□□ -0.77
TRIM28-203ENST00000593582 Q8N3U1 123 aa10.23□□□□□ -0.77
TRIM28-203ENST00000593582 TM2D2Q9BX73 214 aa10.23□□□□□ -0.77
TRIM28-203ENST00000593582 TRAV8-3A0A0A6YYJ7 113 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 F5H697 171 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 UBE2D3P61077 147 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 UBE2D2P62837 147 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 TOR2AQ5JU69 321 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 OR2D3Q8NGH3 330 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 OR10G8Q8NGN5 311 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 AP1S3Q96PC3 154 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 TPPP3Q9BW30 176 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 BIN3Q9NQY0 253 aa10.22□□□□□ -0.77
TRIM28-203ENST00000593582 XKRY2A2RUG3 117 aa10.21□□□□□ -0.77
TRIM28-203ENST00000593582 C19orf71A6NCJ1 209 aa10.21□□□□□ -0.77
TRIM28-203ENST00000593582 P01737 135 aa10.21□□□□□ -0.77
TRIM28-203ENST00000593582 GZMBP10144 247 aa10.21□□□□□ -0.77
TRIM28-203ENST00000593582 KCNIP4Q6PIL6 250 aa10.21□□□□□ -0.77
TRIM28-203ENST00000593582 DAZ4Q86SG3 579 aaKnown RBP10.21□□□□□ -0.77
TRIM28-203ENST00000593582 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-203ENST00000593582 FER1L6-AS1Q8NA97 138 aa10.21□□□□□ -0.77
TRIM28-203ENST00000593582 DAZ3Q9NR90 486 aaKnown RBP10.21□□□□□ -0.77
TRIM28-203ENST00000593582 TRBV20OR9-2A0A075B6H5 130 aa10.2□□□□□ -0.78
TRIM28-203ENST00000593582 LRCOL1A6NCL2 159 aa10.2□□□□□ -0.78
TRIM28-203ENST00000593582 NIT1Q86X76 327 aa10.2□□□□□ -0.78
TRIM28-203ENST00000593582 A0A087WX48 190 aa10.19□□□□□ -0.78
TRIM28-203ENST00000593582 IGLC6P0CF74 106 aa10.19□□□□□ -0.78
TRIM28-203ENST00000593582 BLOC1S1P78537 153 aa10.19□□□□□ -0.78
TRIM28-203ENST00000593582 ALKAL2Q6UX46 152 aa10.19□□□□□ -0.78
TRIM28-203ENST00000593582 NEXN-AS1Q8NBZ9 246 aa10.19□□□□□ -0.78
TRIM28-203ENST00000593582 NTN5Q8WTR8 489 aaPredicted RBP10.19□□□□□ -0.78
TRIM28-203ENST00000593582 RBFOX3A6NFN3 312 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 F2Z2F3 143 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 GCSHP23434 173 aa10.18□□□□□ -0.78
TRIM28-203ENST00000593582 CACNG7P62955 275 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms