RNA–Protein interactions for RNA: ENST00000588542.5

DDX39A-207, Transcript of DExD-box helicase 39A, humanhuman

TSL 3

Gene DDX39A, Length 1,297 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-207ENST00000588542 SMDT1Q9H4I9 107 aa13.92□□□□□ -0.18
DDX39A-207ENST00000588542 RPP21Q9H633 154 aaKnown RBP13.92□□□□□ -0.18
DDX39A-207ENST00000588542 MRPS16Q9Y3D3 137 aaKnown RBP13.92□□□□□ -0.18
DDX39A-207ENST00000588542 XKRY2A2RUG3 117 aa13.91□□□□□ -0.18
DDX39A-207ENST00000588542 RHODO00212 210 aa13.91□□□□□ -0.18
DDX39A-207ENST00000588542 SRIP30626 198 aa13.91□□□□□ -0.18
DDX39A-207ENST00000588542 FAM74A4Q5TZK3 123 aa13.91□□□□□ -0.18
DDX39A-207ENST00000588542 SPANXN1Q5VSR9 72 aa13.91□□□□□ -0.18
DDX39A-207ENST00000588542 LYPD5Q6UWN5 251 aa13.91□□□□□ -0.18
DDX39A-207ENST00000588542 FAM231DQ6ZW35 169 aa13.91□□□□□ -0.18
DDX39A-207ENST00000588542 UPK3BQ9BT76 320 aa13.91□□□□□ -0.18
DDX39A-207ENST00000588542 DNAH17Q9UFH2 4485 aa13.9□□□□□ -0.18
DDX39A-207ENST00000588542 M0R2N4 97 aa13.9□□□□□ -0.18
DDX39A-207ENST00000588542 RAB14P61106 215 aa13.9□□□□□ -0.18
DDX39A-207ENST00000588542 SSTP61278 116 aa13.9□□□□□ -0.18
DDX39A-207ENST00000588542 Q6ZR54 194 aa13.9□□□□□ -0.18
DDX39A-207ENST00000588542 C14orf178Q8N769 122 aaPredicted RBP13.9□□□□□ -0.18
DDX39A-207ENST00000588542 PRADC1Q9BSG0 188 aa13.9□□□□□ -0.18
DDX39A-207ENST00000588542 TPPP3Q9BW30 176 aa13.9□□□□□ -0.18
DDX39A-207ENST00000588542 Q9UF83 564 aa13.9□□□□□ -0.18
DDX39A-207ENST00000588542 FAM74A3Q4VXF1 159 aa13.89□□□□□ -0.19
DDX39A-207ENST00000588542 A0A1W2PPQ1 181 aa13.88□□□□□ -0.19
DDX39A-207ENST00000588542 GATCO43716 136 aaKnown RBP13.88□□□□□ -0.19
DDX39A-207ENST00000588542 CLLU1Q5K131 121 aa13.88□□□□□ -0.19
DDX39A-207ENST00000588542 LYZL1Q6UWQ5 148 aa13.88□□□□□ -0.19
DDX39A-207ENST00000588542 F2Z2F3 143 aa13.87□□□□□ -0.19
DDX39A-207ENST00000588542 CTRLP40313 264 aa13.87□□□□□ -0.19
DDX39A-207ENST00000588542 TMEM241Q24JQ0 296 aa13.87□□□□□ -0.19
DDX39A-207ENST00000588542 Q9H8V8 135 aa13.87□□□□□ -0.19
DDX39A-207ENST00000588542 MSRB1Q9NZV6 116 aa13.87□□□□□ -0.19
DDX39A-207ENST00000588542 KIF25-AS1Q9Y6Z4 181 aa13.87□□□□□ -0.19
DDX39A-207ENST00000588542 LINC00694P0DN24 101 aa13.86□□□□□ -0.19
DDX39A-207ENST00000588542 ERVFC1-1P60608 527 aa13.86□□□□□ -0.19
DDX39A-207ENST00000588542 RPL23P62829 140 aaKnown RBP13.86□□□□□ -0.19
DDX39A-207ENST00000588542 CACNG7P62955 275 aa13.86□□□□□ -0.19
DDX39A-207ENST00000588542 SH2D6Q7Z4S9 175 aa13.86□□□□□ -0.19
DDX39A-207ENST00000588542 GTSF1Q8WW33 167 aa13.86□□□□□ -0.19
DDX39A-207ENST00000588542 OSTCQ9NRP0 149 aa13.85□□□□□ -0.19
DDX39A-207ENST00000588542 FAT2Q9NYQ8 4349 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 EPPK1P58107 5090 aaKnown RBP13.84□□□□□ -0.19
DDX39A-207ENST00000588542 NBDYA0A0U1RRE5 68 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 LINC00315P59091 139 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 CT83Q5H943 113 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 WDR73Q6P4I2 378 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 ISOC2Q96AB3 205 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 AP1S3Q96PC3 154 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 CNFNQ9BYD5 112 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 NAT8Q9UHE5 227 aa13.84□□□□□ -0.19
DDX39A-207ENST00000588542 GAGE12JA6NER3 117 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 A8MWL6 223 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 NTF3P20783 257 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 TIRAPP58753 221 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 RAB4BP61018 213 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 GAGE1Q13065 139 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 GAGE4Q13068 117 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 GAGE5Q13069 117 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 GAGE13Q4V321 117 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 SOHLH1Q5JUK2 328 aa13.83□□□□□ -0.2
DDX39A-207ENST00000588542 KRTAP1-5Q9BYS1 174 aa13.82□□□□□ -0.2
DDX39A-207ENST00000588542 FOXA3P55318 350 aaPredicted RBP13.81□□□□□ -0.2
DDX39A-207ENST00000588542 ADIRFQ15847 76 aa13.81□□□□□ -0.2
DDX39A-207ENST00000588542 ZNF56Q15929 161 aa13.81□□□□□ -0.2
DDX39A-207ENST00000588542 ATP6V0E2Q8NHE4 81 aa13.81□□□□□ -0.2
DDX39A-207ENST00000588542 V9GYV3 84 aa13.81□□□□□ -0.2
DDX39A-207ENST00000588542 TRBV10-1A0A0K0K1A3 114 aa13.8□□□□□ -0.2
DDX39A-207ENST00000588542 SIVA1O15304 175 aa13.8□□□□□ -0.2
DDX39A-207ENST00000588542 SMIM17P0DL12 118 aa13.8□□□□□ -0.2
DDX39A-207ENST00000588542 EVI2AP22794 236 aa13.8□□□□□ -0.2
DDX39A-207ENST00000588542 WFDC10BQ8IUB3 73 aa13.79□□□□□ -0.2
DDX39A-207ENST00000588542 C15orf54Q8N8G6 183 aa13.79□□□□□ -0.2
DDX39A-207ENST00000588542 TSKUQ8WUA8 353 aa13.79□□□□□ -0.2
DDX39A-207ENST00000588542 PGLYRP4Q96LB8 373 aa13.79□□□□□ -0.2
DDX39A-207ENST00000588542 GTSF1LQ9H1H1 148 aa13.79□□□□□ -0.2
DDX39A-207ENST00000588542 RTL8CO15255 209 aa13.78□□□□□ -0.2
DDX39A-207ENST00000588542 TRGC1P0CF51 173 aa13.78□□□□□ -0.2
DDX39A-207ENST00000588542 TWIST1Q15672 202 aa13.78□□□□□ -0.2
DDX39A-207ENST00000588542 OR10G8Q8NGN5 311 aa13.78□□□□□ -0.2
DDX39A-207ENST00000588542 GFRA4Q9GZZ7 299 aa13.78□□□□□ -0.2
DDX39A-207ENST00000588542 F5H697 171 aa13.77□□□□□ -0.21
DDX39A-207ENST00000588542 NEXN-AS1Q8NBZ9 246 aa13.77□□□□□ -0.21
DDX39A-207ENST00000588542 HECTD4Q9Y4D8 3996 aa13.77□□□□□ -0.21
DDX39A-207ENST00000588542 TRBV7-3A0A075B6L6 115 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 FAM231BA6NCW3 169 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 HIGD1CA8MV81 97 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 MGPP08493 103 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 UBE2D3P61077 147 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 UBE2D2P62837 147 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 RPL36AP83881 106 aaKnown RBP13.76□□□□□ -0.21
DDX39A-207ENST00000588542 TTC32Q5I0X7 151 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 LELP1Q5T871 98 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 RPL36ALQ969Q0 106 aaKnown RBP13.76□□□□□ -0.21
DDX39A-207ENST00000588542 DPH3P1Q9H4G8 78 aa13.76□□□□□ -0.21
DDX39A-207ENST00000588542 C1orf134Q5TEV5 83 aa13.75□□□□□ -0.21
DDX39A-207ENST00000588542 PKD1P98161 4303 aa13.74□□□□□ -0.21
DDX39A-207ENST00000588542 M0QY20 66 aa13.74□□□□□ -0.21
DDX39A-207ENST00000588542 DNAH10OSP0CZ25 163 aa13.74□□□□□ -0.21
DDX39A-207ENST00000588542 SUMO4Q6EEV6 95 aa13.74□□□□□ -0.21
DDX39A-207ENST00000588542 C6orf223Q8N319 242 aa13.73□□□□□ -0.21
DDX39A-207ENST00000588542 TRAV8-6A0A0B4J262 113 aa13.72□□□□□ -0.21
DDX39A-207ENST00000588542 OR10J3Q5JRS4 329 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms